Explore software available on ACCESS Resources.
| Software | Installed on | AI Description | AI Tags | AI Research Discipline | AI Software Type | Documentation, Uses, and more |
|---|---|---|---|---|---|---|
| abaqus | Expanse ACES |
Abaqus is a software suite used for finite element analysis and computer-aided engineering simulations for a wide range of industrial applications. It provides powerful simulation capabilities to analyze the behavior of materials and structures under various conditions. | Simulation, Finite Element Analysis, Computer-Aided Engineering, Materials Analysis | Mechanical Engineering | Simulation Software | Documentation, Uses, and more |
| advisor | KyRIC | Advisor is a comprehensive software tool designed for optimizing HPC applications and maximizing performance on current and future HPC systems. It offers insights into performance bottlenecks, parallel patterns, and potential improvements. | Hpc, Performance Optimization, Parallel Computing | Engineering & Technology | Performance Optimization | Documentation, Uses, and more |
| ai-tools-gpu | ACES | A collection of software tools at all levels of the AI stack unlock the full capabilities of Intel hardware. All Intel AI tools and frameworks are built on the foundation of a standards-based, unified oneAPI programming model that helps get the most performance from end-to-end pipelines on all available hardware.\r Description Source: https://www.intel.com/content/www/us/en/developer/topic-technology/artificial-intelligence/frameworks-tools.html |
Intel, AI | Documentation, Uses, and more | ||
| aishell | ACES | AI Shell is an interactive shell that provides a chat interface with language models. The shell provides agents that connect to different AI models and other assistance providers. Users can interact with the agents in a conversational manner.\r Description Source: https://learn.microsoft.com/en-us/powershell/utility-modules/aishell/overview |
AI, Command Line Interface | Documentation, Uses, and more | ||
| alphafold 3 | DeltaAI Delta |
Documentation, Uses, and more | ||||
| alphafold3 | ACES | AlphaFold 3 is DeepMind’s next-generation AI system for predicting the structure and interactions of biological molecules, extending beyond proteins to model complexes involving DNA, RNA, ligands, ions, and other biomolecules. It enables high-accuracy structural predictions that support drug discovery, molecular biology, and biomedical research. | Protein-Structure, Deep-Learning, Bioinformatics | Bioinformatics, Biochemistry and Molecular Biology | Predictive Modeling | Documentation, Uses, and more |
| alsa-lib | DeltaAI | Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system. alsa-lib is a library that provides an interface for programmers to access sound card capabilities. | Linux, Audio, Library | Software Engineering, Computer & Information Sciences | Audio Library | Documentation, Uses, and more |
| amber | Anvil | Amber is a suite of highly extensible molecular simulation programs. It is designed for simulations of biomolecules such as proteins, nucleic acids, and carbohydrates, and can also be used for small molecules. | Molecular Dynamics, Biomolecular Simulations, Quantum Chemistry | Biochemistry & Molecular Biology, Biological Sciences | Molecular Dynamics | Documentation, Uses, and more |
| ambertools | Anvil | AmberTools is a suite of software for molecular dynamics simulations, energy minimization, and trajectory analysis in the field of computational chemistry. It provides tools for the refinement and analysis of biomolecular structures. | Molecular Dynamics, Computational Chemistry, Biomolecular Structure, Energy Minimization | Biophysics, Biological Sciences | Simulation Software | Documentation, Uses, and more |
| amd uprof | Anvil | AMD uProf is a performance analysis tool that provides insights into CPU and memory usage for applications running on AMD processors. It helps developers optimize their code for better performance. | performance analysis, profiling, AMD, CPU, memory | Software Engineering, Computer Science | Profiling Tool | Documentation, Uses, and more |
| amdblis | Anvil | Amdblis is a computational software for analyzing and visualizing single-molecule data, particularly for biophysical studies. | Computational Software, Data Analysis, Visualization | Biophysics, Biological Sciences | Computational Tool | Documentation, Uses, and more |
| amdfftw | Anvil | An AMD optimized version of FFTW. FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data (as well as of even/odd data, i.e. the discrete cosine/sine transforms or DCT/DST). We believe that FFTW, which is free software, should become the FFT library of choice for most applications. Description Source: https://www.fftw.org/ |
Mathematics | Library | Documentation, Uses, and more | |
| amdlibflame | Anvil | AMD LIBFLAME is an open-source software library that provides a high-performance implementation of the dense linear algebra routines on CPUs. It aims to offer efficient and robust algebraic computations for numerical linear algebra applications. | Linear Algebra, Numerical Computations, Performance Optimization | Mathematics, Computer & Information Sciences | Library | Documentation, Uses, and more |
| amdlibm | Anvil | AMDlibm is a software library provided by AMD that offers mathematical functions specifically optimized for high performance on AMD processors. It provides a collection of mathematical functions designed to exploit the advanced features of AMD processors for enhanced numerical computation. | Mathematics, Numerical Computation, Math Library | Mathematics, Engineering & Technology | Math Library | Documentation, Uses, and more |
| amdscalapack | Anvil | ScaLAPACK is a library of high-performance linear algebra routines for parallel distributed memory machines. It depends on external libraries including BLAS and LAPACK for Linear Algebra computations. | Mathematics | Library | Documentation, Uses, and more | |
| amduprof | Expanse | amduprof is a tool developed for profiling OpenCL applications on AMD GPUs. It provides insights into the performance of OpenCL kernels by analyzing memory access patterns, kernel occupancy, and compute unit utilization. | Gpu Profiling, Opencl Profiler, Performance Analysis | Computer Science, Computer & Information Sciences | Tool | Documentation, Uses, and more |
| anaconda | Anvil Jetstream2 |
Anaconda is a free and open-source distribution of Python and R programming languages for scientific computing, that aims to simplify package management and deployment. | Data Science, Scientific Computing, Package Management, Python, R | Computer and Information Sciences | Package Management | Documentation, Uses, and more |
| anaconda3 | Expanse ACES |
Anaconda is a free and open-source distribution of Python programming language for scientific computing that aims to simplify package management and deployment. It includes over 250 popular data science packages and their dependencies, making it a one-stop solution for Python programming in data science, machine learning, deep learning, and other related fields. | Python, Data Science, Machine Learning, Deep Learning, Package Management | Data Science, Computer & Information Sciences | Development Tools | Documentation, Uses, and more |
| ant | ACES | Ant is a build automation tool that is mainly used for Java projects. It automates the process of compiling and building Java applications, along with tasks such as testing and deployment. | Automation, Java, Build Tool, Deployment | Computer Science | Tool | Documentation, Uses, and more |
| aocc | Anvil Expanse Delta Jetstream2 |
The AMD Optimizing C/C++ Compiler (AOCC) is a high performance compiler suite with support for C, C++, and Fortran programming languages. | Compiler, C, C++, Fortran, Optimization | Software Engineering, Computer & Information Sciences | Service | Documentation, Uses, and more |
| aocc-mixed | Delta | Documentation, Uses, and more | ||||
| apbs | ACES | APBS (Adaptive Poisson-Boltzmann Solver) is a software package for solving the Poisson-Boltzmann equation, which is essential for understanding electrostatic interactions in biomolecules. | Electrostatics, Biomolecular Modeling, Computational Chemistry | Bioinformatics, Biochemistry and Molecular Biology | Open Source | Documentation, Uses, and more |
| apptainer | Jetstream2 | Apptainer is a tool for creating and managing containerized applications in a simplified and efficient manner. It provides a user-friendly interface for developers and system administrators to package, distribute, and deploy applications using containerization technology. | Containerization, Application Management, Devops, Software Development | Computer Science, Engineering & Technology | Development | Documentation, Uses, and more |
| aria2 | Expanse | aria2 is a lightweight multi-protocol & multi-source command-line download utility. It supports HTTP/HTTPS, FTP, SFTP, BitTorrent and Metalink. | Download Manager, Command-Line Tool, Multi-Protocol, Multi-Source, File Transfer | Computer Science, Computer & Information Sciences, Other Computer & Information Sciences | Download Manager | Documentation, Uses, and more |
| arm-forge | Expanse | Arm Forge integrates Arm DDT for parallel debugging, Arm MAP for performance profiling, and Arm Performance Reports for summarizing application performance, supporting various parallel architectures like MPI, CUDA, and OpenMP. | HPC, Performance Analysis, Debugging, Profiling | Computer Science | Toolkit | Documentation, Uses, and more |
| arm-gnu-toolchain | ACES | The ARM GNU Toolchain is a collection of tools/libraries used to create applications for embedded ARM processors. It includes the GNU Compiler Collection (GCC) for compiling C/C++ code, GNU Binutils for creating/executing binary files, and GDB for debugging. | Compiler, Embedded Systems, Arm Processor, Toolchain | Software Engineering, Engineering & Technology | Compiler | Documentation, Uses, and more |
| arm-gnu-toolchaint | ACES | Documentation, Uses, and more | ||||
| arpack-ng | Anvil | ARPACK (ARnoldi PACKage) is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. The ARPACK-ng project is a re-implementation of the original ARPACK with the goal of improving its usability, maintainability, and performance across a wide range of modern hardware platforms. | Linear-Algebra, Eigenvalue Problems, Sparse Matrices, Iterative Methods, Computational Physics, Computational Chemistry, Fortran | Mathematics, Physical Sciences | Library | Documentation, Uses, and more |
| atp | DeltaAI Delta |
Abnormal Termination Processing (ATP) is a tool that monitors Cray system user applications. If an application encounters a fatal signal, ATP will handle the signal and perform analysis on the dying application. \r Description Source: https://cpe.ext.hpe.com/docs/debugging-tools/atp.1.html |
Analytical Tool | Documentation, Uses, and more | ||
| autoconf | DeltaAI KyRIC ACES |
Autoconf is a tool for producing configure scripts for building, installing, and packaging software on Unix-like systems. It assists in the process of automating the configuration of software packages and generating portable makefiles. | Build Automation, Software Configuration, Makefiles | General, Engineering & Technology | Build Tools | Documentation, Uses, and more |
| autoconf-archive | KyRIC | A collection of reusable Autoconf macros that extend the capabilities of Autoconf, making it easier to configure software packages. | autoconf, macros, configuration, software development | General, Software Engineering | Service | Documentation, Uses, and more |
| autodock | Anvil | AutoDock is a suite of automated docking tools designed to predict how small molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure. | Computational Chemistry, Molecular Docking, Virtual Screening | Biology, Biological Sciences | Bioinformatics Tool | Documentation, Uses, and more |
| autodock-vina | ACES | AutoDock Vina is an open-source program for performing molecular docking, which predicts the preferred orientation of one molecule to a second when bound to each other to form a stable complex. | Molecular Docking, Bioinformatics, Computational Chemistry, Drug Discovery | Biology, Molecular Docking | Application | Documentation, Uses, and more |
| automake | DeltaAI KyRIC ACES |
Automake is a build automation tool that automatically generates makefiles for software compilation. | Build Automation, Software Development, Compilers | General, Engineering & Technology | Compiler | Documentation, Uses, and more |
| autotools | ACES | Autotools is a suite of programming tools designed to assist in making source code packages portable across different Unix-like systems. It includes autoconf, automake, libtool, and others and is commonly used in open-source software projects. | Programming, Software Development, Build Automation | Software Engineering, Systems & Development, Computer & Information Sciences | Build Automation | Documentation, Uses, and more |
| avogadro2 | ACES | Avogadro 2 is an advanced molecular editor and visualization tool designed for computational chemistry and molecular modeling. | Molecular Modeling, Visualization, Computational Chemistry | Molecular Modeling, Molecular Visualization | Desktop Application | Documentation, Uses, and more |
| aws-cli | DeltaAI | The AWS Command Line Interface (CLI) is a unified tool to manage AWS services from the command line. With just one tool to download and configure, you can control multiple AWS services from the command line and automate them through scripts. | Aws, Command Line Interface, Cloud Management | General, Computer & Information Sciences, Engineering & Technology | Command Line Tool | Documentation, Uses, and more |
| aws-cli tool | Anvil | The AWS Command Line Interface (CLI) is a unified tool to manage your AWS services. With just one tool to download and configure, you can control multiple AWS services from the command line and automate them through scripts. | AWS, CLI, Cloud Computing, Automation, Scripting | Information Technology, Computer Science | Command Line Interface | Documentation, Uses, and more |
| aws-ofi-nccl | Delta | Documentation, Uses, and more | ||||
| bamtools | Anvil Delta |
BamTools is a software toolkit for manipulating BAM (Binary Alignment Map) files. It provides both a C++ API for BAM file input and output, and a command-line tool for performing various operations on BAM files. | Bioinformatics, Bam Files, Sequence Alignment, Toolkit | Biology, Biological Sciences | Toolkit | Documentation, Uses, and more |
| bazelisk | ACES | Bazelisk is a wrapper for Bazel that automatically downloads and installs the correct version of Bazel for your project. | Build System, Automation, Development Tools | Computer Science, Software Engineering | Build Tool | Documentation, Uses, and more |
| bdftopcf | DeltaAI | Documentation, Uses, and more | ||||
| beagle | Anvil Delta |
Beagle is a high-performance software library for phylogenetic inference using maximum likelihood methods. It can be used for reconstructing large phylogenetic trees from molecular sequence data with high efficiency and accuracy. | Phylogenetic Inference, Maximum Likelihood, Molecular Sequence Data, Parallel Processing, Likelihood Calculations | Genetics, Biological Sciences | Library | Documentation, Uses, and more |
| beagle-lib | DeltaAI | Beagle-lib is a high-performance library for evaluating the likelihood of sequence evolution on phylogenetic trees. It is designed to implement the BEAGLE (Broad-platform Evolutionary Analysis General Likelihood Evaluator) application programming interface (API) for helping in tasks related to phylogenetic inference in computational biology. | Computational Biology, Phylogenetic Inference, Likelihood Evaluation, Evolutionary Analysis, Bioinformatics | Biology | Library | Documentation, Uses, and more |
| beast2 | Anvil | BEAST2 is a cross-platform program for Bayesian evolutionary analysis of molecular sequences. It is widely used for estimating species trees, gene trees, divergence times, substitution rates, and demographic parameters using various models of sequence evolution. | Phylogenetics, Evolutionary Analysis, Molecular Sequences, Bayesian Inference | Ecology, Biological Sciences | Tool | Documentation, Uses, and more |
| beastx | DeltaAI | Documentation, Uses, and more | ||||
| bedtools2 | Delta | Bedtools2 is a powerful suite of tools for manipulating genomic features and annotations. It allows users to perform a wide range of tasks on genomic intervals, such as intersecting, merging, comparing, and analyzing BED, GFF, VCF, and other common genomic file formats. | Genomic Data Analysis, Bed Files, Bioinformatics | Biology, Biological Sciences | Tool | Documentation, Uses, and more |
| berkeley-db | Anvil DeltaAI KyRIC |
Berkeley DB is a high-performance database library that provides developers with a variety of data management capabilities, including support for key/value pairs, transactions, and concurrency control. | Database, Embedded Systems, High Performance, Data Management | Storage, Hpc Applications, Computer Science | Library | Documentation, Uses, and more |
| binutils | ACES | Binutils is a collection of binary tools, including linker (ld), assembler (as), archiver (ar), and other tools to manipulate object files and executables. | Binary Tools, Linker, Assembler, Object Files | General, Computer & Information Sciences | System Software | Documentation, Uses, and more |
| biocontainers | Anvil | BioContainers is a project that provides bioinformatics tools and workflows in a containerized format, making it easier to package, distribute, and run bioinformatics software in a reproducible manner. | Bioinformatics, Containers, Reproducibility, Software Packaging, Workflow Management | Biology, Biological Sciences | Containerization | Documentation, Uses, and more |
| bismark | Anvil | Bismark is a software tool specifically designed for aligning bisulfite treated DNA sequencing reads and methylation calls. It is widely used in epigenetics research to analyze DNA methylation patterns. | Epigenetics, DNA Methylation, Bisulfite Sequencing, Genomics, Bioinformatics | Genomics, Biological Sciences | Alignment & Methylation Analysis | Documentation, Uses, and more |
| bison | DeltaAI ACES |
Bison is a general-purpose parser generator that converts a grammar description for an LALR context-free grammar into a C program to parse that grammar. It is part of the GNU Project. | Parser Generator, Programming Language Tool | General, Computer & Information Sciences | Parser Generator | Documentation, Uses, and more |
| blas | Expanse | BLAS (Basic Linear Algebra Subprograms) is a standard API for basic vector and matrix operations. It provides routines for performing basic vector operations, matrix-vector operations, and matrix-matrix operations. | linear algebra, performance, mathematics, computational science | Numerical Analysis, Applied Mathematics | Library | Documentation, Uses, and more |
| blast-plus | Anvil | BLAST+ is a suite of programs designed to allow researchers to compare nucleotide or protein sequences to sequence databases and identify similarities. | Bioinformatics, Sequence Analysis, Genomics, Molecular Biology | Biology, Genomics | Tool | Documentation, Uses, and more |
| blender | ACES | Blender is a free and open-source 3D creation suite that supports the entire 3D pipeline – modeling, rigging, animation, simulation, rendering, compositing and motion tracking, even video editing and game creation. | 3D Modeling, Computer Graphics, Animation, Simulation, Open-Source | General, Engineering & Technology | Visual Arts Software | Documentation, Uses, and more |
| blis | Anvil | BLAS (Basic Linear Algebra Subprograms) implemented in native C and suitable for high-performance implementations. BLIS is capable of achieving high levels of performance on various architectures. | Blas, Linear Algebra, High Performance Computing, Optimization | Mathematics, Computer & Information Sciences | Computational Software | Documentation, Uses, and more |
| bonnie++ | Expanse | Bonnie++ is a benchmarking tool that measures the performance of file systems and storage devices. It provides a comprehensive suite of tests to assess the read and write performance of a system's disk and file system. | Benchmarking, File System, Performance Testing | Systems and Development, Computer Science | Benchmarking Tool | Documentation, Uses, and more |
| boost | Anvil Expanse KyRIC Delta |
Boost is a set of C++ libraries that provides support for tasks and structures such as linear algebra, pseudorandom number generation, multithreading, image processing, regular expressions, and unit testing. It aims to extend the functionality of C++ programming language and make it more efficient and powerful. | C++ Libraries, Programming Support, Efficiency Enhancement | Computer Science, Software Engineering, Systems & Development, Computer & Information Sciences | Development Tool | Documentation, Uses, and more |
| bowtie | Delta | Bowtie is a fast and memory-efficient short read aligner for short DNA sequences. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million reads per hour on a typical workstation with a large amount of memory. | Bioinformatics, Genomics, DNA Sequencing, Sequence Alignment | Genetics, Biological Sciences | Alignment Tool | Documentation, Uses, and more |
| bowtie2 | Anvil Delta |
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly well-suited for aligning sequencing reads of DNA sequences, such as those generated by high-throughput sequencing technologies. | Alignment, Sequencing Reads, DNA Sequences, High-Throughput Sequencing, Bioinformatics, Genomics | Bioinformatics, Biological Sciences | Sequence Alignment | Documentation, Uses, and more |
| btop | DeltaAI Delta |
btop is a resource monitor that provides a visually appealing and interactive interface for monitoring system resources such as CPU, memory, and network usage. | System Monitoring, Resource Management, Performance Analysis | Systems, Computer Science | Monitoring Tool | Documentation, Uses, and more |
| bwa | Anvil | Burrows-Wheeler Aligner (BWA) is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. It consists of three algorithms: BWA-backtrack, BWA-SW, and BWA-MEM. The BWA-backtrack algorithm is designed for Illumina sequence reads up to 100bp, while BWA-SW and BWA-MEM are for longer Illumina reads, including 100bp reads produced by the HiSeq 2000 platform. | Sequence Alignment, Bioinformatics, Genomics, Next-Generation Sequencing (Ngs) | Biology, Biological Sciences | Bioinformatics Tool | Documentation, Uses, and more |
| byacc | Expanse | byacc is a public domain LALR parser generator which is often used as a replacement for yacc. LALR parsers are used in the generation of efficient parsers for modern programming languages. | Parser Generator, Lalr, Context-Free Grammar | General, Computer & Information Sciences | Development Tool | Documentation, Uses, and more |
| bzip2 | Anvil DeltaAI Expanse KyRIC ACES |
bzip2 is a free and open-source file compression program that uses the Burrows-Wheeler algorithm for compression and Huffman coding for decompression. It is designed to be fast and efficient in compressing large files while retaining a high compression ratio. | File Compression, Data Compression, Utility Software | General, Computer & Information Sciences | Compression Tool | Documentation, Uses, and more |
| cairo | Anvil DeltaAI |
Cairo is a 2D graphics library with support for multiple output devices. It provides a vector-based rendering engine for high-quality graphics with full support for transparency and anti-aliasing. | Graphics Library, 2D Graphics, Rendering Engine | Graphics, Computer & Information Sciences | Library | Documentation, Uses, and more |
| camus | ACES | Documentation, Uses, and more | ||||
| ccdb | DeltaAI Delta |
CCDB (Cell Cycle Database) is a freely accessible, comprehensive resource for the cell cycle community. It provides information and tools to study cell cycle regulation and its role in cancer and other diseases. | Cell Cycle, Cell Biology, Database | Cell Biology, Biological Sciences | Curated Data Resource | Documentation, Uses, and more |
| cce | DeltaAI Delta |
Compiler Construction Engine (CCE) is a software tool used for building compilers and interpreters. It provides a set of tools and libraries to assist in the creation of programming language implementations. | Compiler, Interpreter, Programming Language, Compiler Construction | Computer Science, Computer & Information Sciences | Compiler/Interpreter | Documentation, Uses, and more |
| cce-mixed | DeltaAI Delta |
cce-mixed is a software package designed for performing calculations in the framework of many-body perturbation theory for the electronic structure of solids. It focuses on the GW approximation, self-energy calculations, and the solution of the Bethe-Salpeter equation for optical excitations. | Computational Chemistry, Quantum Mechanics, Electronic Structure Calculations | Condensed Matter Physics, Physical Sciences | Electronic Structure Calculation | Documentation, Uses, and more |
| ccl | KyRIC | CCL (Cpp Command Line Library) is a C++ library targeting Unix platform that makes it easy to define and parse command line arguments. It provides a simple and intuitive way to define and parse command-line arguments for C++ programs. | Command Line Interface, C++ Library | Documentation, Uses, and more | ||
| cdo | Anvil | Climate Data Operators (CDO) is a collection of command-line operators for manipulating and analyzing climate and numerical weather prediction (NWP) model data. | Climate Data, Data Manipulation, Command Line, Data Analysis | Environmental Science, Earth & Environmental Sciences | Command Line Tool | Documentation, Uses, and more |
| cereal | ACES | Cereal is a C++11 library for serialization. It is designed to be fast, compact, and have an easy-to-use API. | Serialization, C++, Library | Software Engineering, Computer & Information Sciences | Data Serialization | Documentation, Uses, and more |
| charmpp | KyRIC | Charm++ is a parallel programming model and system that provides an object-oriented approach to parallel programming. It is designed to facilitate the development of parallel applications by allowing developers to focus on the structure of their applications rather than the underlying details of parallel execution. | Parallel Computing, Object-oriented Programming, Load Balancing, Adaptive Applications | Computer Science | Library | Documentation, Uses, and more |
| checkm-database | ACES | Documentation, Uses, and more | ||||
| chimerax | ACES | ChimeraX is a software tool for the visualization and analysis of molecular structures, density maps, and related data. It is widely used in the field of structural biology and computational chemistry for studying complex biomolecular systems. | Molecular Visualization, Structural Biology, Computational Chemistry | Bioinformatics, Biological Sciences | Analysis & Visualization Tool | Documentation, Uses, and more |
| cistem | ACES | CISTEM is a computational framework designed for the prediction of dual phase RNA secondary structures. | Computational Framework, RNA Secondary Structures Prediction | Bioinformatics, Biological Sciences | Bioinformatics Tool | Documentation, Uses, and more |
| clck | KyRIC | Documentation, Uses, and more | ||||
| clusterbot | Anvil | Documentation, Uses, and more | ||||
| cm-image | Expanse | Documentation, Uses, and more | ||||
| cm-pmix3 | Expanse | cm-pmix3 is a lightweight, high-performance library that provides process management and control functions for large-scale computing environments. | Process Management, High-Performance Computing, Job Scheduling | Other Computer & Information Sciences, Engineering & Technology | System & Process Management | Documentation, Uses, and more |
| cm-scale | Expanse | Documentation, Uses, and more | ||||
| cm-setup | Expanse | Documentation, Uses, and more | ||||
| cmake | Anvil DeltaAI Expanse KyRIC ACES Delta |
CMake is an open-source, cross-platform family of tools designed to build, test, and package software. It is used to control the software compilation process using simple platform and compiler-independent configuration files. | Build System, Cross-Platform, Software Development | Software Engineering, Systems & Development, Engineering & Technology | Developer Tools | Documentation, Uses, and more |
| cmd | Expanse | The cmd module in Python provides a framework for building interactive command line applications. It allows developers to easily create command-line interfaces by defining a set of commands and their associated functions. | Command Line, Python Module | Computer & Information Sciences | Framework | Documentation, Uses, and more |
| cmjob | Expanse | cmjob is a Python-based tool for computational materials science that aids in automating the submission of multiple jobs on high-performance computing clusters. It simplifies the process of handling multiple job submissions, tracking job statuses, and organizing job outputs. | Hpc, Computational Materials Science, Python Library | Documentation, Uses, and more | ||
| cmsh | Expanse | Documentation, Uses, and more | ||||
| coco | ACES | Documentation, Uses, and more | ||||
| colabfold | Delta | ColabFold is a collaborative project that aims to bring together deep learning and biophysical modeling for protein structure prediction. It provides an easy-to-use interface for researchers to perform protein folding predictions using state-of-the-art techniques. | Protein Structure Prediction, Deep Learning, Biophysical Modeling | Bioinformatics, Biological Sciences | Protein Structure Prediction Tool | Documentation, Uses, and more |
| compiler | KyRIC | A compiler is a special program that processes statements written in a particular programming language and turns them into machine language or "code" that a computer's processor uses. It typically acts as a translator that converts high-level programming languages into machine language. | Compiler, Software Development, Programming | Software Engineering, Computer & Information Sciences | Compiler | Documentation, Uses, and more |
| compiler-rt | KyRIC | compiler-rt stands for Compiler Runtime Library. It is a collection of runtime libraries that provide low-level support for compiler-generated code. It is designed to be used with the LLVM compiler infrastructure and is commonly used in conjunction with Clang. The compiler-rt libraries implement runtime parts of the language features that are not supported directly by the compiler. | Runtime Library, Compiler Support, Low-Level Support, Language Features | Computer Science, Computer & Information Sciences | Library | Documentation, Uses, and more |
| compiler-rt32 | KyRIC | The compiler-rt32 project is a runtime library that provides functionality for compilers in the 32-bit architecture. It includes various runtime components such as sanitizers, builtins, and support libraries for handling memory operations and error detection. | Compiler, Runtime Library, 32-Bit Architecture | Computer Science, Computer & Information Sciences | Runtime Library | Documentation, Uses, and more |
| compiler32 | KyRIC | compiler32 is a lightweight and efficient compiler software designed for compiling source code into executable programs. It supports various programming languages and optimization techniques to enhance the performance of the compiled code. | Compiler, Software Development, Programming | Computer & Information Sciences | Development Tools | Documentation, Uses, and more |
| conceptual captions 3 million (cc3m) | ACES | Documentation, Uses, and more | ||||
| conda | Anvil | Conda is an open-source package management system and environment management system that runs on Windows, macOS, and Linux. It is designed to quickly install, run, and update packages and their dependencies. | package management, environment management, cross-platform, open-source | Software Engineering, Computer Science | Package Manager | Documentation, Uses, and more |
| cp2k | Anvil | CP2K is an open-source quantum chemistry and solid state physics software package designed to perform atomistic simulations of solid-state, liquid, molecular, and biological systems. It can be used to study a wide range of properties, including electronic structures, molecular dynamics, and vibrational spectra. | Computational Chemistry, Quantum Mechanics, Molecular Dynamics | Physical Sciences | Molecular Simulation | Documentation, Uses, and more |
| cpe | DeltaAI Delta |
CPE (Common Platform Enumeration) is a standardized method to describe and identify classes of applications, operating systems, and hardware devices in a consistent format. It provides unique identifiers for these entities to facilitate accurate and efficient information exchange between different security tools and databases. | Software Identification, Cybersecurity, Information Exchange | Computer Science, Computer & Information Sciences | Tool | Documentation, Uses, and more |
| cpu | Expanse | CPU (Central Processing Unit) is a hardware component of a computer that executes instructions and performs calculations. It is considered the brain of the computer and is responsible for carrying out tasks and running applications. | Hardware, Computing, Technology | Computer & Information Sciences | Component | Documentation, Uses, and more |
| craype | DeltaAI Delta |
Cray Programming Environment (CrayPE) is a suite of tools and libraries designed for high-performance computing on Cray supercomputers. | HPC, Supercomputing, Compilers, Performance Libraries | Computer Science | Development Tools | Documentation, Uses, and more |
| craype-accel | DeltaAI Delta |
Documentation, Uses, and more | ||||
| craype-x86 | DeltaAI Delta |
Documentation, Uses, and more | ||||
| craypkg-gen | DeltaAI Delta |
Documentation, Uses, and more | ||||
| cryosparc | ACES | CryoSPARC is a comprehensive software platform for cryo-EM data processing that enables high-resolution structure determination of biological macromolecules. | Cryo-Em, Biological Macromolecules, Structural Biology, Data Processing | Biophysics, Biological Sciences | Cryo-Em Software | Documentation, Uses, and more |
| cryptsetup | KyRIC | cryptsetup is a utility used to conveniently set up disk encryption based on the Dm-crypt kernel module. It allows users to easily configure encrypted block devices using LUKS (Linux Unified Key Setup), manage cryptographic volumes, and interact with encrypted volumes. | Disk Encryption, Data Security, Cryptography, Linux | Cryptography, Computer & Information Sciences | System Software | Documentation, Uses, and more |
| cti | DeltaAI Delta |
CTI (Common Threat Intelligence) is an open source library designed to parse and manipulate structured threat intelligence information. It provides a set of APIs to work with different threat intelligence data formats and supports the serialization of data into various formats. | Threat Intelligence, Data Parsing, Open Source | Threat Intelligence | Documentation, Uses, and more | |
| cuda | DeltaAI Anvil ACES Delta |
CUDA is a parallel computing platform and application programming interface model created by NVIDIA. It allows software developers to use a CUDA-enabled graphics processing unit for general-purpose processing. | Parallel Computing, Gpu Programming, High Performance Computing, Software Development | Computer Science, Computer & Information Sciences | Compiler | Documentation, Uses, and more |
| cuda (deprecated shim) | DeltaAI | Documentation, Uses, and more | ||||
| cuda-compat | DeltaAI Delta |
Documentation, Uses, and more | ||||
| cuda-compat (deprecated shim) | DeltaAI | Documentation, Uses, and more | ||||
| cuda-quantum | Anvil | cuda-quantum is a CUDA-accelerated quantum computing simulator designed to efficiently simulate quantum circuits on NVIDIA GPUs. It provides a high-performance platform for simulating large-scale quantum computations with a focus on speed and scalability. | Quantum Computing, Cuda-Accelerated, Quantum Simulator, Nvidia Gpu, High-Performance Computing | Computer Science | Quantum Computing Simulator | Documentation, Uses, and more |
| cuda10.2/profiler | Expanse | Documentation, Uses, and more | ||||
| cuda10.2/toolkit | Expanse | Documentation, Uses, and more | ||||
| cuda11.7/profiler | Expanse | Documentation, Uses, and more | ||||
| cuda11.7/toolkit | Expanse | Documentation, Uses, and more | ||||
| cuda12.2/profiler | Expanse | Documentation, Uses, and more | ||||
| cuda12.2/toolkit | Expanse | Documentation, Uses, and more | ||||
| cudacore | ACES | cudacore is a high-performance computational software that leverages GPU (Graphics Processing Unit) computing through CUDA (Compute Unified Device Architecture) for accelerated processing of scientific and engineering applications. | Computational Software, Cuda, Gpu Computing, Scientific Computing, Engineering Applications | Other Engineering & Technologies, Engineering & Technology | High-Performance Computing Tool | Documentation, Uses, and more |
| cudatoolkit | DeltaAI Delta |
The CUDA Toolkit is a development environment for creating high-performance GPU-accelerated applications. It includes libraries, debugging and optimization tools, a compiler, and a runtime environment. | GPU Computing, Parallel Computing, High-Performance Computing | Computer Science, Artificial Intelligence and Intelligent Systems | Development Toolkit | Documentation, Uses, and more |
| cudf | ACES | CUDF is part of the RAPIDS suite of open-source software libraries and APIs built on CUDA. It provides a DataFrame manipulation library leveraging GPU acceleration for loading, joining, aggregating, filtering, and otherwise manipulating tabular data. | Dataframe, Gpu Acceleration, Data Manipulation | Computational Data Analysis, Computer & Information Sciences, Artificial Intelligence & Intelligent Systems | Library | Documentation, Uses, and more |
| cudnn | DeltaAI Anvil ACES |
The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library for deep neural networks. It provides highly optimized implementations of common deep learning operations. | Deep Learning, Artificial Intelligence, Machine Learning, Gpu Acceleration, Neural Networks | Computer Science | Deep Learning Accelerator | Documentation, Uses, and more |
| cue-login-env | Anvil Expanse Delta |
Cue-login-env is a Python library that provides an easy way to configure user-specific environments within shared servers or computing clusters. It helps users manage their environment variables, aliases, and paths without interfering with the system-wide configurations. | Python Library, User-Specific Environment, Shared Servers, Computing Clusters | Computer & Information Sciences | Python Library | Documentation, Uses, and more |
| cufflinks | Anvil | Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. | RNA-Seq, Transcriptomics, Bioinformatics | Biology, Biological Sciences | Tool | Documentation, Uses, and more |
| cuquantum-appliance | Anvil | Documentation, Uses, and more | ||||
| curl | Anvil DeltaAI Expanse KyRIC |
curl is a command-line tool and library for transferring data with URLs. It supports various protocols including HTTP, HTTPS, FTP, FTPS, SCP, SFTP, and more. It is widely used in scripting and automation tasks, as well as for debugging network issues. | Networking, Data Transfer, Command-Line, Scripting | Computer Science, Computer & Information Sciences, Other Computer & Information Sciences | Networking Tool | Documentation, Uses, and more |
| cusparselt | ACES | CusparseLT library is a lightweight version of NVIDIA's cuSPARSE library designed for sparse matrix operations on NVIDIA GPUs. It offers high-performance accelerated computation for sparse matrix manipulation in GPU-accelerated applications. | Sparse Matrix Operations, Gpu Acceleration, Linear Algebra, Cuda Programming | Computer Science, Computer & Information Sciences | Computational Software | Documentation, Uses, and more |
| cutensor | ACES | cuTensor is a CUDA-accelerated library for tensor operations in NVIDIA GPUs. It provides optimized implementations for tensor contractions and element-wise operations, allowing for efficient computation of large-scale tensor operations in parallel. | Cuda, Gpu Acceleration, Tensor Operations, Parallel Computing | Applied Computer Science, Computer & Information Sciences | Computational Software | Documentation, Uses, and more |
| dal | KyRIC | DAL is a library for collision avoidance in robotics applications. | Robotics, Collision Avoidance | Engineering & Technology | Collision Avoidance Software | Documentation, Uses, and more |
| dataversioncontrol/dvc | ACES | Documentation, Uses, and more | ||||
| debugger | KyRIC | A debugger is a software tool that allows programmers to track down and fix bugs (errors) in their programs. It enables users to step through code, inspect variables, set breakpoints, and analyze the program's execution flow. | Debugging, Software Development | Engineering & Technology | Debugger | Documentation, Uses, and more |
| default-orig | DeltaAI | Documentation, Uses, and more | ||||
| default-rh9test | Delta | Documentation, Uses, and more | ||||
| default-sp5 | DeltaAI | Documentation, Uses, and more | ||||
| default-update | DeltaAI | Documentation, Uses, and more | ||||
| default_svc | DeltaAI | Documentation, Uses, and more | ||||
| defaultmodules | Expanse | Documentation, Uses, and more | ||||
| desmond | ACES | Desmond is a molecular dynamics simulation software designed for studying biological systems at the atomic level. It is widely used for drug discovery, protein folding, and molecular interactions. | Molecular Dynamics, Biological Systems, Drug Discovery, Protein Folding | Biochemistry & Molecular Biology, Biological Sciences | Molecular Dynamics Software | Documentation, Uses, and more |
| dev-utilities | KyRIC | Dev-utilities is a collection of various development utilities that assist software developers in various aspects of the development process. These utilities can range from code editors and version control systems to build automation tools and testing frameworks. | Development, Utilities | Computer & Information Sciences, Other Computer & Information Sciences | Tools | Documentation, Uses, and more |
| diffutils | KyRIC | Diffutils is a collection of utilities for comparing and finding differences between text files. It includes programs like `diff` for showing the differences between two files, `cmp` for comparing two files byte by byte, and `diff3` for comparing three files. | Text Comparison, File Difference, Text Analysis, Version Control | Software Engineering, Engineering & Technology | Text Processing | Documentation, Uses, and more |
| dimemas | KyRIC | DIMemas is a software tool for the automatic performance prediction of parallel applications. It utilizes simulation techniques to estimate the performance of parallel applications on large-scale systems. | Performance Prediction, Parallel Applications, Simulation, Large-Scale Systems | Computer Science, Engineering & Technology | Performance Prediction Tool | Documentation, Uses, and more |
| dnnl | KyRIC | Deep Neural Network Library (DNNL) is an open-source, performance-oriented library for deep learning applications. Formerly known as Intel Math Kernel Library for Deep Neural Networks (MKL-DNN), it provides optimized building blocks for implementation of deep learning neural network layers on various hardware platforms. | Deep Learning, Neural Networks, Machine Learning, Performance Optimization | Artificial Intelligence & Intelligent Systems, Computer & Information Sciences | Deep Learning Library | Documentation, Uses, and more |
| dnnl-cpu-gomp | KyRIC | The dnnl-cpu-gomp is an open-source deep neural network library developed for CPU-based computations employing OpenMP (Open Multi-Processing) as a thread-processing technology. | Deep Learning, Neural Networks, Openmp, Cpu Computing | Machine Learning, Computer & Information Sciences | Computational Software | Documentation, Uses, and more |
| dnnl-cpu-iomp | KyRIC | dnnl-cpu-iomp is an optimization library for deep neural network computations on CPU using Intel OpenMP (iomp) for improved performance. | Deep Learning, Optimization, Cpu Acceleration | Computer & Information Sciences | Documentation, Uses, and more | |
| dnnl-cpu-tbb | KyRIC | DNNL (Deep Neural Network Library) with TBB (Threading Building Blocks) support for optimized performance on CPU architectures. | Deep Learning, High-Performance Computing, Multi-threading, CPU Optimization | Artificial Intelligence, Artificial Intelligence and Intelligent Systems | Library | Documentation, Uses, and more |
| docker | Expanse | Docker is a platform that enables users to develop, ship, and run applications within containers. Containers allow developers to package up an application with all parts it needs, such as libraries and other dependencies, and ship it all out as one package. | Containerization, Deployment, Scalability, Isolation | Computer Science, Computer & Information Sciences | Virtualization | Documentation, Uses, and more |
| dorado | ACES | Dorado is a software tool used for performance evaluation and benchmarking in HPC (High-Performance Computing) environments. It allows users to assess the performance of parallel applications and optimize their running times on supercomputers and clusters. | Performance Evaluation, Benchmarking, Hpc, Supercomputing | Biology, Engineering & Technology | Tool | Documentation, Uses, and more |
| dos2unix | Delta | dos2unix is a command-line utility that converts text files with DOS or Windows line endings (CRLF) to Unix line endings (LF) format. | Text Conversion, Line Endings, Command-Line Utility | Software Engineering, Computer & Information Sciences | Utility | Documentation, Uses, and more |
| dot | Expanse | Graphviz is open source graph visualization software. It has several main graph layout programs. It also has web and interactive graphical interfaces, and auxiliary tools, libraries, and language bindings. | Graph Visualization, Open Source, Graph Layout | Graph Theory, Computer & Information Sciences | Graph Visualization Software | Documentation, Uses, and more |
| doxygen | Expanse | Doxygen is a documentation generator tool that is used to generate software reference documentation from annotated source code. It supports multiple programming languages and produces output in various formats, including HTML, LaTeX, RTF, and more. | Documentation Generator, Software Development, Programming | Software Development, Software Engineering, Systems & Development | Tool | Documentation, Uses, and more |
| dpct | KyRIC | Data Parallel C++ for CUDA is a C++ programming model for accelerators based on the NVIDIA CUDA architecture. It allows users to write C++ code that can be compiled to target NVIDIA GPUs using CUDA for parallel execution. | Cuda Programming, Gpu Computing, Parallel Programming | Computer Science, Computer & Information Sciences | Development Compiler | Documentation, Uses, and more |
| dpl | KyRIC | dpl is a software for performing direct programming language analysis. | Programming Language Analysis, Syntax Analysis, Language Structure Analysis | Documentation, Uses, and more | ||
| dsmml | DeltaAI Delta |
dsmml is a deep learning library specifically designed for molecular machine learning applications. It offers a range of tools and techniques tailored for computational chemistry and drug discovery tasks. | Deep Learning, Molecular Machine Learning, Computational Chemistry, Drug Discovery | Chemical Sciences, Other Chemical Sciences | Deep Learning Library | Documentation, Uses, and more |
| duckdb | Anvil | DuckDB is an in-process SQL OLAP database management system designed for analytical query workloads. It is optimized for fast query execution and supports a wide variety of data formats. | Database, SQL, OLAP, Analytics, Data Science | Computer Science | Database Management System | Documentation, Uses, and more |
| dyninst | DeltaAI Delta |
Dyninst is a versatile and powerful binary instrumentation and analysis tool that provides capabilities for runtime code analysis, modification, and monitoring in C, C++, and Fortran applications. | Binary Instrumentation, Code Analysis, Runtime Monitoring | Software Engineering, Computer & Information Sciences | Tool | Documentation, Uses, and more |
| easybuild | KyRIC ACES |
EasyBuild is an open-source framework for building and installing software packages on High-Performance Computing (HPC) systems. It aims to make building software easier for system administrators and users on HPC systems by automating the build process. | Software Building, High-Performance Computing, Automation | Computer Science, Engineering & Technology | Build Automation | Documentation, Uses, and more |
| easybuild-aces | ACES | EasyBuild-ACES is a collection of EasyBuild framework recipes for building commonly used software packages within the Army Combat Capabilities Development Command Army Research Laboratory (CCDC-ARL) Computational and Information Sciences Directorate (CISD) Advanced Computing, Engineering and Software (ACES) research group. | Software Development, Tools, Packages | Computer & Information Sciences | Tools | Documentation, Uses, and more |
| easybuild-aces-scratch | ACES | User EasyBuild environment for aces.hprc.tamu.edu in $SCRATCH/eb. Description Source: https://hprc.tamu.edu/software/aces/# |
Documentation, Uses, and more | |||
| easybuild-aces-tmp | ACES | EasyBuild is a software build and installation framework for high-performance computing (HPC) systems. The aces-tmp tool is a temporary directory management tool that is part of the EasyBuild framework. | Software Build, Installation Framework, Hpc Systems, Temporary Directory Management | Infrastructure & Instrumentation, Engineering & Technology | Tool | Documentation, Uses, and more |
| ecbuild | ACES | ecBuild is a CMake-based build system generator for Earth system model (ESM) projects. It focuses on enabling easy configuration and management of complex ESM projects by automating the generation of build systems. | Build System Generator, Earth System Model, Cmake-Based, Esm Project, Model Coupling, Parallel Execution | Meteorology, Earth & Environmental Sciences | Build System Generator | Documentation, Uses, and more |
| eigen | Anvil | Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms. | Linear Algebra, Numerical Computation, C++ Library | Applied Mathematics, Computer & Information Sciences | Linear Algebra Library | Documentation, Uses, and more |
| elfutils | DeltaAI | elfutils is a collection of various binary tools for working with ELF files. It includes utilities for analyzing, manipulating, and creating programs and object files in the Executable and Linkable Format (ELF). These tools are commonly used by programmers, debuggers, and system administrators to inspect and modify ELF binaries. | Binary Tool, Elf Files, Debugging, Programming | Software Engineering, Other Computer and Information Sciences | Utility | Documentation, Uses, and more |
| emacs | Anvil DeltaAI |
Emacs is a highly customizable, extensible, and self-documenting text editor. It is known for its powerful editing capabilities, which include content-aware editing, syntax highlighting, and a wide range of plugins and extensions. | Text Editor, Customizable, Extensible, Self-Documenting | Software Engineering, Computer & Information Sciences | Text Editor | Documentation, Uses, and more |
| emboss | Expanse | EMBOSS is a comprehensive software analysis package for biological sequence data. It provides over 200 tools for sequence alignment, database searching, pattern matching, motif identification, and more. EMBOSS is widely used in bioinformatics and computational biology research. | Bioinformatics, Computational Biology, Sequence Analysis, Biological Data | Bioinformatics, Biological Sciences | Analysis Tool | Documentation, Uses, and more |
| entrezdirect | Expanse | Entrez Direct (EDirect) is a set of UNIX command-line utilities that provide access to the Entrez databases at the National Center for Biotechnology Information (NCBI). It allows users to retrieve, manipulate, and analyze data from various NCBI databases including PubMed, Gene, and Protein. | bioinformatics, data retrieval, NCBI, command-line tools | Computational Biology, Bioinformatics | Command-line utility | Documentation, Uses, and more |
| expat | Anvil DeltaAI KyRIC |
Expat is an XML parser library written in C. It is a fast and lightweight library that is designed for high-performance applications. | Xml Parser, Library | Software Engineering, Computer & Information Sciences | Xml Parser | Documentation, Uses, and more |
| extrae | KyRIC | Extrae is a performance analysis tool designed to capture and analyze trace data from parallel and distributed applications. It allows users to monitor and examine the behavior of their applications in terms of performance, identifying potential bottlenecks and areas for optimization. | Performance Analysis, Trace Data, Parallel Applications, Distributed Applications | Computer Science, Computer & Information Sciences, Software Engineering, Systems & Development, Engineering & Technology, Training, Infrastructure & Instrumentation | Tool | Documentation, Uses, and more |
| fastqc | Anvil ACES Delta |
FastQC is a quality control tool for high throughput sequence data. It provides a detailed overview of the quality and potential issues in sequencing data generated by high throughput sequencing pipelines. | Quality Control, High Throughput Sequencing, Sequence Analysis, Bioinformatics | Biology, Biological Sciences | Analysis Tool | Documentation, Uses, and more |
| fasttext | ACES | Documentation, Uses, and more | ||||
| fasttree | Anvil | FastTree is a tool for inferring approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle alignments with up to a few thousand sequences and has been designed to make trees with the minimum scale up to 100,000 sequences faster by approximating maximum-likelihood with heuristics. | Phylogenetics, Bioinformatics, Computational Biology, Sequence Analysis | Bioinformatics, Biological Sciences | Bioinformatics Tool | Documentation, Uses, and more |
| fastx-toolkit | Anvil | The fastx-toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing. The tools simplify and streamline various tasks related to quality control, adapter trimming, and format conversion of next-generation sequencing data. | Bioinformatics, Ngs Data Processing, Sequence Analysis, Fastq Manipulation | Biology, Biological Sciences | Tool | Documentation, Uses, and more |
| fetk | ACES | Documentation, Uses, and more | ||||
| ffmpeg | Anvil DeltaAI Delta |
FFmpeg is a free and open-source software project consisting of a large suite of libraries and programs for handling video, audio, and other multimedia files and streams. | Media Processing, Multimedia, Video, Audio | Computer Science | Tool | Documentation, Uses, and more |
| ffnvcodec | ACES | ffnvcodec is a codec library provided by NVIDIA for efficient video encoding and decoding using the NVIDIA GPU hardware acceleration. | Codec, Video Processing, Gpu Acceleration | Applied Computer Science, Computer & Information Sciences | Library | Documentation, Uses, and more |
| fft | Expanse | The Fast Fourier Transform (FFT) is an algorithm to compute the Discrete Fourier Transform (DFT) and its inverse efficiently. It is widely used in signal processing, image analysis, and solving partial differential equations. | Fourier Transform, Signal Processing, Numerical Methods | Numerical Analysis, Applied Mathematics | Library | Documentation, Uses, and more |
| fftw | Anvil DeltaAI KyRIC Delta |
FFTW is a fast C library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data. It is widely used in areas such as signal processing, data compression, and solving partial differential equations. | Signal Processing, Data Compression, Partial Differential Equations | Applied Mathematics, Mathematics | Computational Software | Documentation, Uses, and more |
| fiji | ACES | Fiji is an image processing package, a distribution of ImageJ, bundling a lot of plugins which facilitate scientific image analysis. It is open-source software extensively used in scientific research for image visualization and processing. | Image Processing, Scientific Research, Image Analysis | Bioinformatics, Other Natural Sciences | Analysis Tool | Documentation, Uses, and more |
| findutils | DeltaAI | findutils is a collection of command-line utilities for searching and processing files on Unix-like systems. It includes tools such as find, xargs, and locate that allow users to search directory hierarchies, filter files based on attributes (name, size, time, permissions), and perform actions on matching files, making it essential for system administration and scripting. | Unix, Linux, file searching, command-line tools, system utilities, shell scripting | Systems Programming, Computer Science | System utility software | Documentation, Uses, and more |
| firefox | ACES | Mozilla Firefox, commonly known as Firefox, is a free and open-source web browser developed by the Mozilla Foundation and its subsidiary, Mozilla Corporation. It is available for Windows, macOS, Linux, and mobile devices. Firefox focuses on privacy, speed, and customization. | Web Browser, Internet, Privacy, Open-Source, Cross-Platform | Software Engineering, Computer & Information Sciences | Web Browser | Documentation, Uses, and more |
| flex | DeltaAI ACES |
Flex is a fast lexical analyzer generator. It is a tool for creating programs that perform pattern-matching on text. It reads the given input files for a description of a scanner to generate and produces a C source file for the scanner. The output file, lex.yy.c, can then be compiled and linked with the flex runtime library to produce an executable. The resulting executable will scan input files for occurrences of the regular expressions in the scanner description, and perform actions specified in the description. | Lexical Analyzer, Text Processing, Pattern Matching, Scanner Generator | Software Engineering, Other Computer and Information Sciences | Compiler Tool | Documentation, Uses, and more |
| font-util | Anvil DeltaAI |
Documentation, Uses, and more | ||||
| fontconfig | Anvil DeltaAI |
Fontconfig is a library designed to provide system-wide font configuration, customization, and management for user interfaces and text display on Linux and other Unix-like operating systems. It allows applications to discover and access fonts, and provides settings for font selection, aliasing, subsetting, and caching. | Fontconfig, Font Management, Font Configuration, Linux, Unix-Like Systems | Software Engineering, Engineering & Technology | System Tool | Documentation, Uses, and more |
| fontsproto | DeltaAI | Documentation, Uses, and more | ||||
| foss | ACES | FOSS (Free and Open Source Software) refers to software that is both free to use and distribute, as well as with access to the source code for modification or enhancement by users. | Free Software, Open Source Software, Software Development | Other Computer & Information Sciences | Software Library | Documentation, Uses, and more |
| fosscuda | ACES | FOSSCUDA stands for Free and Open-Source Software for CUDA (Compute Unified Device Architecture) and is a collection of tools and libraries that enable developers to leverage the power of NVIDIA GPUs for parallel computing tasks. | Cuda, Gpu Computing, Parallel Programming, Open-Source | Computer Science, Computer & Information Sciences | Compiler/Library | Documentation, Uses, and more |
| freeipmi | Expanse | FreeIPMI is an open-source BMC (Baseboard Management Controller) software that provides a consistent and reliable interface for managing and monitoring IPMI-compliant systems. It allows administrators to remotely manage server hardware, monitor sensors, power on/off servers, and perform other BMC-related functions. | Bmc, Baseboard Management Controller, Open-Source, Hardware Management, Monitoring | Applied Computer Science, Computer & Information Sciences | Management & Monitoring Tool | Documentation, Uses, and more |
| freesurfer | Expanse | FreeSurfer is a software suite used for the analysis and visualization of structural and functional neuroimaging data from MRI and CT scans. It is widely used in the field of neuroscience and neuroimaging research. | Neuroimaging, Mri Analysis, Brain Segmentation, Functional Mri, Image Visualization | Neuroscience, Biological Sciences | Scientific | Documentation, Uses, and more |
| freetype | Anvil DeltaAI |
FreeType is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in various applications that require text rendering, such as operating systems, web browsers, desktop publishing tools, and more. | Font Engine, Text Rendering, Typography | Software Engineering, Computer & Information Sciences | Font Engine | Documentation, Uses, and more |
| fribidi | DeltaAI | GNU FriBidi is an implementation of the Unicode Bidirectional Algorithm (bidi). It also provides utility functions to help work with bidirectional text. | Unicode, Bidirectional Algorithm | Natural Language Processing, Computer & Information Sciences | Text Processing | Documentation, Uses, and more |
| gatk | Anvil | The Genome Analysis Toolkit (GATK) is a widely used software package for variant discovery and genotyping analysis in high-throughput sequencing data. Developed by the Broad Institute, GATK provides a robust and comprehensive set of tools for processing raw sequencing data into accurate variant calls. | Variant Calling, Genotyping, Sequencing Analysis | Biology, Biological Sciences | Tool | Documentation, Uses, and more |
| gawk | KyRIC | Gawk is a powerful text processing utility that allows for pattern scanning and processing. It is based on the Awk programming language and is particularly useful for manipulating text files and generating reports. | Text Processing, Data Manipulation, Pattern Scanning | Chemistry, Computer & Information Sciences | Text Processing Tool | Documentation, Uses, and more |
| gcc | Anvil DeltaAI Expanse KyRIC ACES |
GNU Compiler Collection (GCC) is a free and open-source compiler system that supports various programming languages and platforms. It is widely used for compiling high-level programming languages into executable code for a variety of computer architectures. | Compiler, Software Development, Programming | Computer Science | Development Tools | Documentation, Uses, and more |
| gcc-native | DeltaAI Delta |
gcc-native is a compiler system produced by the GNU Project supporting various programming languages, most notably C, C++, and Fortran. It is the default compiler for many Unix-like operating systems. | Compiler, Gnu, Programming Language | Computer Science, Computer & Information Sciences | Native Compiler | Documentation, Uses, and more |
| gcc-native-mixed | DeltaAI Delta |
The gcc-native-mixed compiler is a version of the GNU Compiler Collection (GCC) that is specifically optimized for mixed-language programming, allowing developers to combine different programming languages within the same codebase. | Compiler, Mixed-Language Programming, Optimization | Computer Science | Development Tool | Documentation, Uses, and more |
| gcccore | ACES | gcccore refers to the core components of the GNU Compiler Collection (GCC), which is a collection of compilers for several programming languages. These core components provide essential functionality for compiling code and generating executable programs. | Compiler, Programming, Software Development | Computer Science, Computer & Information Sciences, Software Engineering, Systems & Development | Core Component | Documentation, Uses, and more |
| gcccuda | ACES | gcccuda is a wrapper around the GCC C compiler that enables CUDA programming directly in C without the need for NVCC. It allows developers to write CUDA code using familiar C syntax and compile it with the GCC compiler. | Cuda Programming, C Compiler Wrapper, Parallel Computing | Computer Science, Computer & Information Sciences | Development Tool | Documentation, Uses, and more |
| gcloud | ACES | gcloud is a command-line interface for Google Cloud Platform, enabling users to manage resources and applications hosted on Google Cloud. | Cloud Computing, Infrastructure, DevOps, Command Line Tools | Computer Science | Command Line Interface | Documentation, Uses, and more |
| gdal | Anvil DeltaAI |
GDAL (Geospatial Data Abstraction Library) is a translator library for raster and vector geospatial data formats that is released under an X/MIT style Open Source license. It is a collection of geospatial data manipulation libraries that support raster and vector data formats, and includes protocols to access geospatial data sources. | Geospatial Data, Raster Data, Vector Data, Data Formats, Geospatial Analysis | Geographic Information Systems, Earth & Environmental Sciences, Engineering & Technology | Library | Documentation, Uses, and more |
| gdb | Anvil DeltaAI Expanse |
GDB, the GNU Project debugger, allows you to see what is going on 'inside' another program while it executes or what another program was doing at the moment it crashed. | Debugger, Programming, Software Development | Computer Science, Computer & Information Sciences | Debugger | Documentation, Uses, and more |
| gdb4hpc | DeltaAI Delta |
gdb4hpc is a plugin designed to enhance the GNU Debugger (GDB) for High Performance Computing (HPC) applications. It provides additional features to aid in debugging parallel and distributed applications typically used in HPC environments. | Debugging, Hpc, Parallel Programming, Performance Analysis | Computer Science, Engineering & Technology | Plugin | Documentation, Uses, and more |
| gdbm | Anvil DeltaAI KyRIC |
GNU dbm (GDBM) is a library that provides an abstraction for a simple database manager. It allows for the creation and manipulation of key/value pairs in a persistent database, with support for fast lookup, retrieval, insertion, and deletion operations. | Database Management, Key-Value Store, Persistent Storage, Api | Computer Science, Computer & Information Sciences | Library | Documentation, Uses, and more |
| gdc-client | KyRIC | Documentation, Uses, and more | ||||
| geant4-data | ACES | Datasets for Geant4. | Documentation, Uses, and more | |||
| geos | Anvil DeltaAI |
Geos is an open-source geometry engine that provides C++ software libraries and tools for processing spatial data. It is a key component of the PostGIS spatial database extender and is used in various GIS software applications. | Geometry Engine, Spatial Data Processing, Gis, Open-Source | Other Computer & Information Sciences, Computer & Information Sciences | Geospatial Software | Documentation, Uses, and more |
| gettext | Anvil DeltaAI KyRIC ACES |
GNU gettext is a package providing a framework for internationalization and localization of software. It includes tools for extracting translatable strings from source code, for generating message catalogs (pot files), and for translating the strings into different languages. | Internationalization, Localization, Software Development | Software Engineering, Computer & Information Sciences | Localization Tool | Documentation, Uses, and more |
| gfbf | ACES | Gfbf is a compiler for Boolean functions, implemented as an SMT/SAT translation tool. It takes a Boolean function expressed as an algebraic normal form (ANF) as input and produces output in various formats including Conjunctive Normal Form (CNF), Decision Diagrams, and Truth Tables. The tool is designed to efficiently manipulate and analyze Boolean functions for various applications in logic synthesis, verification, and optimization. | Compiler, Boolean Functions, Logic Synthesis, Verification, Optimization | Computer Science, Computer & Information Sciences | Compilation Tool | Documentation, Uses, and more |
| gfms | Anvil | Documentation, Uses, and more | ||||
| gh | Expanse | GitHub CLI is a command-line tool that allows users to interact with GitHub directly from the terminal. It simplifies workflows by enabling users to manage repositories, issues, pull requests, and more without leaving the command line. | GitHub, CLI, Version Control, Open Source | Computer Science, Software Engineering | Command Line Interface | Documentation, Uses, and more |
| ghostscript | Anvil | Ghostscript is a versatile software suite for viewing, converting, and printing PostScript and PDF files. It is widely used for rasterizing files for high-quality printing and viewing on a variety of devices. | Document-Processing, File-Conversion, Print-Management | Computer Science, Computer & Information Sciences, Engineering & Technology | Software Development | Documentation, Uses, and more |
| git | KyRIC | Git is a distributed version control system designed to handle everything from small to very large projects with speed and efficiency. It is an open-source tool that is widely used for source code management in software development. | Version Control, Software Development, Source Code Management | Computer Science, Computer & Information Sciences, Software Engineering, Systems & Development | Development Tools | Documentation, Uses, and more |
| git-lfs | DeltaAI ACES |
Git Large File Storage (LFS) is a Git extension that reduces the impact of large files in your repository by replacing them with text pointers while storing the actual file content on a remote server. It seamlessly integrates with Git and provides efficient handling of large files, making it easier to work with version-controlled repositories containing large assets. | Version Control, File Storage, Git Extension | Version Control, Engineering & Technology | Development Tool | Documentation, Uses, and more |
| glib | Anvil DeltaAI |
GLib is a general-purpose utility library for the C programming language. It provides data structure handling for lists, trees, hashes, memory allocation, and other commonly needed functionality. | Utility Library, C Programming, Data Structures, Memory Management, Thread Support | Software Engineering, Computer & Information Sciences | Utility | Documentation, Uses, and more |
| glibc | DeltaAI | glibc, the GNU C Library, is an essential part of most systems running the Linux kernel. It provides the necessary functionality for programs written in the C programming language to interact with the operating system and hardware. | C Library, Operating System, System Programming | Computer & Information Sciences | Library | Documentation, Uses, and more |
| gmake | Delta | GNU Make is a tool that controls the generation of executables and other non-source files from a program's source files. It is widely used for managing build processes in software development. | Build Automation, Makefile, Open Source, GNU | Computer Science, Software Engineering | Build System | Documentation, Uses, and more |
| gmp | Anvil DeltaAI Expanse KyRIC |
The GNU Multiple Precision Arithmetic Library (GMP) is a free library for arbitrary-precision arithmetic, operating on signed integers, rational numbers, and floating-point numbers. | Computational Software, Library, Mathematics, Software Development | Pure Mathematics, Mathematics | Library | Documentation, Uses, and more |
| gmt | Anvil | The Generic Mapping Tools (GMT) is an open-source collection of command-line tools for manipulating geographic and Cartesian data sets (including filtering, trend fitting, gridding, projecting, etc.) and producing PostScript illustrations ranging from simple x-y plots through contour maps to artificially illuminated surfaces and 3-D perspective views. GMT supports over 40 map projections and transformations and comes with support data such as coastlines, rivers, and political boundaries. | Mapping, Geographic Data, Cartesian Data, Illustration, Postscript, Map Projections | Geography, Earth & Environmental Sciences | Command Line Tool | Documentation, Uses, and more |
| gnu autotools | KyRIC | GNU Autotools is a suite of programming tools designed to assist in making source code packages portable to many Unix-like systems. | Build System, Configuration, Software Development | Software Development, Software Engineering | Build System | Documentation, Uses, and more |
| gnu compiler collection | KyRIC | The GNU Compiler Collection (GCC) is a set of compilers for various programming languages, including C, C++, and Fortran, designed to support a wide range of platforms and architectures. | Compiler, Open Source, Cross-Platform | Computer Science | Compiler | Documentation, Uses, and more |
| gnuconfig | DeltaAI | Documentation, Uses, and more | ||||
| gnuplot | Anvil DeltaAI Expanse Delta |
Gnuplot is a portable command-line driven graphing utility for Linux, OS/2, MS Windows, OSX, VMS, and many other platforms. It is capable of producing interactive plots and supports various output formats. | Graphing, Visualization, Data Analysis | Computational Science, Physical Sciences | Plotting & Data Visualization | Documentation, Uses, and more |
| gnutls | DeltaAI | GnuTLS is a secure communications library implementing the SSL, TLS and DTLS protocols, providing various cryptographic algorithms. | Security, Encryption, Networking | Cryptography, Computer & Information Sciences | Library | Documentation, Uses, and more |
| go | Expanse KyRIC ACES |
Go is an open-source programming language designed for simplicity and efficiency, particularly in systems programming and web development. | Programming Language, Open Source, Concurrency, Systems Programming | Software Engineering, Computer Science | Programming Language | Documentation, Uses, and more |
| go-bootstrap | KyRIC | go-bootstrap is a Go programming language template project that provides a starting point for building Go applications with a predefined project structure, configuration, and best practices. | Go, Template, Project Structure, Best Practices | Engineering & Technology | Template Project | Documentation, Uses, and more |
| gobject-introspection | DeltaAI | GObject Introspection is a middleware layer between C libraries (using GObject) and language bindings. The goal is to make the C libraries accessible from scripting languages and other environments without the need for manual intervention. | Middleware, Language Bindings, Automation, Compatibility | Computer Science, Computer & Information Sciences | Library | Documentation, Uses, and more |
| gomkl | ACES | GOMKL is a library that provides optimized mathematical routines for high-performance computing applications, particularly those that require linear algebra operations. | High-Performance Computing, Linear Algebra, Mathematics, Optimization | Applied Mathematics, Mathematics | Library | Documentation, Uses, and more |
| gompi | ACES | Gompi is a parallel computing software tool that provides a set of compilers and libraries for running MPI (Message Passing Interface) programs on HPC (High Performance Computing) clusters. It aims to enhance the performance of parallel applications by optimizing communication and coordination between nodes in distributed computing environments. | Hpc, Parallel Computing, Mpi, Distributed Computing | Engineering & Technology | Documentation, Uses, and more | |
| gompic | ACES | gompic is an open-source framework for simulating collective dynamics in soft matter systems with a focus on granular materials. It is designed to simulate the dynamics of large ensembles of particles undergoing complex interactions and can be used to study phenomena like granular flow, pattern formation, and self-organization. | Simulation, Granular Materials, Collective Dynamics, Soft Matter | Other Physical Sciences, Physical Sciences | Research | Documentation, Uses, and more |
| gotranseq | ACES | Documentation, Uses, and more | ||||
| gpaw-setups | ACES | Documentation, Uses, and more | ||||
| gperf | DeltaAI | GNU gperf is a perfect hash function generator tool that generates perfect hash functions for sets of keys, optimized for use in constructing a minimal perfect hash table. | Perfect Hash Function, Hash Table, Optimization, Gnu | Computer Science, Computer & Information Sciences | Compiler/Generator | Documentation, Uses, and more |
| gpu | Expanse | GPU, short for Graphics Processing Unit, is a specialized electronic circuit designed to rapidly manipulate and alter memory to accelerate the creation of images in a frame buffer intended for output to a display device. In recent years, GPUs have been leveraged for general-purpose computing, allowing for massive parallel processing capabilities. | Software, Computational Software, Hpc Tools, Gpu, Parallel Processing | Engineering & Technology, Computer & Information Sciences | Hardware | Documentation, Uses, and more |
| grads | Anvil | GrADS (Grid Analysis and Display System) is an interactive desktop tool that is used for easy access, manipulation, and visualization of earth science data. It is particularly popular in meteorology and climatology for analyzing and plotting meteorological data. | Data Visualization, Meteorology, Climatology, Earth Science, Data Analysis | Meteorology, Earth & Environmental Sciences | Desktop Application | Documentation, Uses, and more |
| gromacs | Anvil DeltaAI KyRIC Delta |
GROMACS (GROningen MAssive Parallel MD for Molecular Dynamics) is a versatile package for molecular dynamics simulations with a strong emphasis on high-performance computing capabilities. | Molecular Dynamics, Simulation, High Performance Computing, Biomolecular Systems | Chemistry, Biological Sciences | Molecular Dynamics Software | Documentation, Uses, and more |
| gsl | Anvil DeltaAI Delta |
The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. It provides a wide range of mathematical routines such as special functions, linear algebra, interpolation, numerical integration, random numbers, and more. | Numerical Library, Mathematical Functions, C Programming, C++ Programming | Mathematics, Other Mathematics | Library | Documentation, Uses, and more |
| gstreamer | Anvil | GStreamer is a multimedia framework that allows the construction of graphs of media-handling components, ranging from simple Ogg/Vorbis playback to complex audio (mixing) and video (non-linear editing) processing. It is designed to be easily extended with new plugins that provide new functionality. | Multimedia, Framework, Media Processing, Audio, Video | Software Engineering, Computer & Information Sciences | Framework | Documentation, Uses, and more |
| gurobi | Anvil Delta |
Gurobi Optimization is a high-performance mathematical programming solver for linear programming (LP), mixed-integer programming (MIP), and other related optimization problems. | Optimization, Mathematical Programming, Linear Programming, Mixed-Integer Programming | Optimization, Mathematics | Solver | Documentation, Uses, and more |
| gzip | DeltaAI Delta |
gzip is a file compression and decompression tool used to reduce the size of files for storage or transfer purposes. It is a widely used compression utility in Unix-like operating systems. | File Compression, Data Storage, Data Transfer | Computer Science, Engineering & Technology | Compression Tool | Documentation, Uses, and more |
| hadoop | Anvil Expanse |
Hadoop is an open-source framework used for distributed storage and processing of large sets of data on computer clusters using simple programming models. | Big Data, Data Processing, Distributed Computing | Computer Science, Computer & Information Sciences | Framework | Documentation, Uses, and more |
| harfbuzz | DeltaAI | HarfBuzz is an open-source text shaping engine. It is used to convert Unicode text to beautifully formatted and language-appropriate glyphs. HarfBuzz focuses on providing correct script shaping for complex scripts and languages. | Text Shaping Engine, Unicode Text, Text Layout, Font Features Customization | Software Engineering, Computer & Information Sciences | Library | Documentation, Uses, and more |
| hdf | Anvil | HDF (Hierarchical Data Format) is a flexible and extensible file format for storing and managing large amounts of data. It supports various data types, attributes, and metadata, making it suitable for a wide range of scientific and engineering applications. | Data Management, File Format, Data Visualization, Api | Data Management, Other Computer & Information Sciences | File Format | Documentation, Uses, and more |
| hdf5 | Anvil DeltaAI Expanse Delta |
HDF5 (Hierarchical Data Format version 5) is a file format and a suite of tools developed by the HDF Group for managing and storing large and complex data. It is designed to store and organize large amounts of data efficiently, enabling fast data access and sharing. | File Format, Data Management, Data Storage, Data Sharing, High-Performance Computing | Computational Science, Other Computer & Information Sciences | Library/Tool | Documentation, Uses, and more |
| hdf5-parallel | DeltaAI Delta |
HDF5 Parallel is an extension of the HDF5 library that allows for parallel I/O operations, enabling efficient data access and manipulation in high-performance computing environments. | HDF5, Parallel Computing, Data Management, High Performance Computing | High-Performance Computing, Data Management | Library | Documentation, Uses, and more |
| hdf5_18 | Expanse | HDF5 is a file format and set of tools for managing complex data. It is designed to store and organize large amounts of data and is widely used in scientific computing. | Data Management, File Format, Scientific Computing | Data Science, Computer Science | Library | Documentation, Uses, and more |
| hisat2 | Delta | HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome). It builds on HISAT and Bowtie, allowing for significantly improved performance and new capabilities. | Alignment, Ngs, Genomics, Transcriptomics | Biology, Biological Sciences | Alignment Tool | Documentation, Uses, and more |
| hpc-x | ACES | hpc-x is a high-performance computing (HPC) software package designed to provide optimized libraries, tools, and compilers for scientific computing on HPC systems. It aims to enhance the performance and efficiency of parallel computing applications on modern HPC architectures. | Hpc, High-Performance Computing, Scientific Computing, Parallel Computing | Engineering & Technology | Hpc Tools | Documentation, Uses, and more |
| hpctoolkit | Anvil | HPCToolkit is a performance analysis tool for high-performance computing applications. It provides a comprehensive suite of tools for profiling, tracing, and analyzing the performance of parallel applications. | performance analysis, profiling, high-performance computing, parallel computing | Computer Science | Analysis Tool | Documentation, Uses, and more |
| hprc_utils | ACES | hprc_utils is a collection of utility tools for managing and analyzing High Performance Computing (HPC) environments and workflows. | Hpc, High Performance Computing, Utility Tools | Engineering & Technology | Tool | Documentation, Uses, and more |
| htop | DeltaAI Delta |
htop is an interactive system-monitor process-viewer for Unix systems. It provides a detailed overview of system performance and resource usage in a visually appealing and user-friendly interface. | System Monitoring, Process Viewer, Resource Usage | Systems, Engineering & Technology | Monitoring Tool | Documentation, Uses, and more |
| htslib | Delta | HTSlib is a C library for processing high-throughput sequencing data in the form of SAM, BAM, and CRAM formats. It allows for efficient reading, writing, and manipulation of such files, as well as various operations such as format conversion, indexing, and retrieval of specific sequences. | Bioinformatics, Sequencing Data, File Format Processing, C Library | Genomics, Biological Sciences | Data Processing | Documentation, Uses, and more |
| hwloc | Anvil Expanse KyRIC |
hwloc, the Portable Hardware Locality (hwloc), is an open-source hierarchical machine topology library used to provide abstract representation of the hierarchical topology of modern architectures. | Machine Topology, Hardware Architecture, System Software | Computer Science, Computer & Information Sciences | Library | Documentation, Uses, and more |
| hyper-shell | Anvil | hyper-shell is a command-line terminal replacement that aims to enhance the user experience and productivity through various features and customizations. | Terminal Emulator, Productivity Tool, Command-Line Interface | Computer & Information Sciences | Command-Line Tool | Documentation, Uses, and more |
| hypershell | Anvil | Documentation, Uses, and more | ||||
| iccifort | ACES | iccifort is a software tool that provides the Intel C++ and Fortran compilers for high-performance computing applications. These compilers are designed to optimize code performance for Intel processors. | Compiler, High-Performance Computing, Optimization | Engineering & Technology | Programming Tool | Documentation, Uses, and more |
| icu4c | DeltaAI KyRIC |
ICU (International Components for Unicode) is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications. ICU is widely portable and gives applications the same results on all platforms and between C/C++ and Java software. | Unicode, Globalization, Cross-Platform, Libraries | Software Engineering, Computer & Information Sciences | Development | Documentation, Uses, and more |
| idl | Expanse | IDL (Interactive Data Language) is a programming language used for data analysis, visualization, and application development. It provides a comprehensive set of tools for scientific research and data processing. | Software, Data Analysis, Data Visualization, Scientific Research | Data Analysis, Physical Sciences | Programming Language | Documentation, Uses, and more |
| iimpi | ACES | IIMPI (Isobaric Ion Mobility Mass Spectrometry with Peak Integration) is a software tool specifically designed for analyzing ion mobility-mass spectrometry data with a focus on accurate peak integration in the presence of isobaric co-elution. | Ion Mobility-Mass Spectrometry, Peak Integration, Data Analysis | Bioinformatics, Biological Sciences | Analytical Tool | Documentation, Uses, and more |
| ijulia | ACES | iJulia is an interactive notebook interface for the Julia programming language, enabling users to create and share documents that contain live code, equations, visualizations, and narrative text. | Julia, Notebooks, Interactive Computing, Data Science, Scientific Computing | Computational Science, Data Science | Interactive Notebook | Documentation, Uses, and more |
| imagej | ACES | ImageJ is a public domain, Java-based image processing program developed at the National Institutes of Health. It is widely used for scientific image analysis and visualization. | Image Processing, Scientific Tool, Java-Based, Open-Source | Computational Biology, Biochemistry and Molecular Biology | Image Processing Software | Documentation, Uses, and more |
| imagemagick | Delta | ImageMagick is a free and open-source software suite for creating, editing, composing, or converting bitmap images. | Image Processing, Graphics Editing, Conversion Tool | Image Processing, Computer & Information Sciences | Utility | Documentation, Uses, and more |
| imagenet | ACES Delta |
Documentation, Uses, and more | ||||
| imb | KyRIC | IMB stands for In-Memory Database benchmark. It is a benchmarking tool specifically designed to evaluate the performance of in-memory databases. | Benchmarking, In-Memory Databases | Computer & Information Sciences | Tool | Documentation, Uses, and more |
| imkl | ACES | imkl is a open-source software library for creating and managing knowledge graphs for various applications in artificial intelligence, data science, and information retrieval. | Software Library, Knowledge Graph, Artificial Intelligence, Data Science, Information Retrieval | Computer & Information Sciences, Artificial Intelligence & Intelligent Systems | Open-Source | Documentation, Uses, and more |
| impi | Anvil | impi is a high-performance message passing library that provides asynchronous messaging and queuing functionalities for parallel computing applications. | Message Passing Library, Parallel Computing, Asynchronous Messaging | High-Performance Computing, Engineering & Technology | Communication Library | Documentation, Uses, and more |
| impute2 | Delta | IMPUTE2 is a tool for imputing ungenotyped markers in large-scale genome-wide association studies. | Genotype Imputation, Genome-Wide Association Studies, Bioinformatics | Genetics, Biological Sciences | Tool | Documentation, Uses, and more |
| init_opencl | KyRIC | init_opencl is a software library that is used to initialize OpenCL platforms and create OpenCL contexts for parallel computing applications. | Software, Compiler, Library, Hpc | Computer & Information Sciences | Software Development | Documentation, Uses, and more |
| inputproto | DeltaAI | A package that provides the headers used to compile Xlib clients. | Software Development, Headers, Xlib | Computer & Information Sciences | Library | Documentation, Uses, and more |
| inspector | KyRIC | Inspector is a software tool used for monitoring and analyzing various aspects of computer systems and networks to detect and prevent security breaches or performance issues. | Monitoring, Security, Network Analysis | Computer Science, Computer & Information Sciences | Security Software | Documentation, Uses, and more |
| intel compiler | Expanse KyRIC ACES Jetstream2 |
The Intel Compiler is a suite of high-performance compilers from Intel for various programming languages, including C, C++, and Fortran. It is designed to maximize application performance on Intel architecture-based processors. | Compiler, Optimization, Performance, Debugging | Computer Science, Computer & Information Sciences | Development Tools | Documentation, Uses, and more |
| intel-compilers | ACES | Intel Compilers are a suite of optimizing compilers for C, C++, and Fortran programming languages, designed to enhance performance on Intel architectures. | compilers, performance optimization, C++, Fortran, parallel computing | Computer Science, Software Engineering | Commercial | Documentation, Uses, and more |
| intel-mkl | Anvil | Intel Math Kernel Library (MKL) is a library of optimized math routines for science, engineering, and financial applications. | Mathematics, Performance, Numerical Computing | Applied Mathematics, Numerical Analysis | Library | Documentation, Uses, and more |
| intel-oneapi-compilers | Delta | Intel oneAPI Compilers provide a unified programming model for high-performance computing, enabling developers to optimize applications across various architectures including CPUs and GPUs. | compilers, high-performance computing, Intel, oneAPI, C++, Fortran | Computer Science, Software Engineering | Compiler | Documentation, Uses, and more |
| intel-oneapi-mkl | Delta | Intel oneAPI Math Kernel Library (MKL) provides highly optimized mathematical functions for scientific computing, including linear algebra, fast Fourier transforms, and vector mathematics. | Mathematics, High-Performance Computing, Numerical Libraries | Numerical Analysis, Applied Mathematics | Library | Documentation, Uses, and more |
| intel-parallel-studio | Anvil | Intel Parallel Studio is a suite of development tools for creating high-performance applications. It includes compilers, libraries, and performance analysis tools to optimize code for Intel architectures. | HPC, Parallel Computing, Performance Optimization, Development Tools | Computer Science | Commercial | Documentation, Uses, and more |
| intel/aikit | ACES | Documentation, Uses, and more | ||||
| intel_ipp_ia32 | KyRIC | Intel Integrated Performance Primitives (IPP) for IA-32 architecture provides a set of highly optimized software functions for multimedia processing, data processing, and communications. | HPC, Performance Optimization, Multimedia Processing | Computer Science, Computer and Information Sciences | Library | Documentation, Uses, and more |
| intel_ipp_intel64 | KyRIC | Intel Integrated Performance Primitives (Intel IPP) provides high-performance software libraries that are designed to help developers improve the performance of their applications. Intel IPP offers a wide range of functions that are optimized for Intel architecture, including signal, imaging, cryptography, and data processing algorithms. | Software Development, Performance Optimization, Data Processing, Signal Processing, Image Processing, Cryptography | Software Engineering, Computer & Information Sciences, Systems & Development | Commercial | Documentation, Uses, and more |
| intel_ippcp_ia32 | KyRIC | Intel Integrated Performance Primitives - Cryptography (IPP-Crypto) is a library that provides highly optimized building blocks for a variety of encryption and decryption algorithms on Intel architecture processors. It aims to accelerate cryptographic operations to enhance performance in software applications. | Cryptographic Library, Performance Optimization, Intel Architecture | Computer & Information Sciences | Compiler/Library | Documentation, Uses, and more |
| intel_ippcp_intel64 | KyRIC | Intel Integrated Performance Primitives Cryptography (IPP Cryptography) is a collection of highly optimized cryptographic functions and algorithms developed by Intel for high-performance computing applications. It provides a set of cryptographic functions optimized for Intel processors to enhance the security and performance of cryptographic operations in software. | Cryptography, High-Performance Computing, Intel Processors, Security | Computer & Information Sciences | Optimization Library | Documentation, Uses, and more |
| intelclusterchecker | ACES | Documentation, Uses, and more | ||||
| intelpython | ACES | Documentation, Uses, and more | ||||
| ior | Delta | ior is a versatile software tool for analyzing and optimizing input/output (I/O) performance in high-performance computing (HPC) systems. It is designed to assess and improve the efficiency of data transfer operations in parallel computing environments. | High-Performance Computing, Parallel Computing, I/O Optimization | Computer Science | Utility Software | Documentation, Uses, and more |
| iozone | Expanse | Iozone is a filesystem benchmark tool that provides a wide range of file I/O performance measurements. It is used to measure the performance of various file operations such as read, write, re-read, and random access. | Benchmarking, File I/O, Performance Testing, Filesystem | Systems, Software Engineering | Benchmarking Tool | Documentation, Uses, and more |
| iperf3 | DeltaAI Delta |
iperf3 is a tool for actively measuring the maximum achievable bandwidth on IP networks. It supports various parameters to customize the testing process and is widely used for network performance testing and tuning. | Network Testing, Bandwidth Measurement, Network Performance | Computer Science, Computer & Information Sciences | Tool | Documentation, Uses, and more |
| ipmitool | Expanse | ipmitool is an open-source utility for managing and configuring devices that support the Intelligent Platform Management Interface (IPMI) specification. It allows users to interact with IPMI-enabled devices to retrieve information, perform system management tasks, and monitor hardware sensors remotely. | System Management, Hardware Monitoring, Remote Administration, Open Source | Computer Science, Engineering & Technology | Utility | Documentation, Uses, and more |
| iqtree3 | DeltaAI | IQ-TREE is a fast and effective software for phylogenetic inference based on maximum likelihood (ML) methods. | phylogenetics, maximum likelihood, bioinformatics | Bioinformatics, Phylogenetics | Standalone | Documentation, Uses, and more |
| itac | KyRIC | Intel Trace Analyzer and Collector (ITAC) is a performance analysis tool designed for parallel applications. It provides in-depth performance data to help developers optimize the performance of their parallel code. | Performance Analysis, Parallel Applications, Optimization | Computer & Information Sciences | Compiler | Documentation, Uses, and more |
| java | ACES | Java is a widely-used programming language and computing platform that is designed to be fast, secure, and reliable. It is commonly used for building mobile applications, web applications, enterprise applications, and more. | Programming Language, Computing Platform | Software Engineering, Computer & Information Sciences | Compiler | Documentation, Uses, and more |
| jmol | ACES | Jmol is an open-source Java viewer for chemical structures in 3D with features for visualization, analysis, and manipulation of molecular structures. | Molecular Visualization, Molecular Analysis, Chemistry | Physical Chemistry, Inorganic & Nuclear Chemistry, Chemical Sciences | Modeling & Simulation | Documentation, Uses, and more |
| json-c | DeltaAI KyRIC |
Json-c is a C library for encoding, decoding, and manipulating JSON data. It provides functions for parsing JSON input, creating JSON output, manipulating JSON data structures, and validating JSON data. | C Library, Json Encoding, Json Decoding, Data Manipulation | Computer Science, Computer & Information Sciences | Data Processing | Documentation, Uses, and more |
| json-glib | DeltaAI | json-glib is a library that provides a JSON parsing and serialization API for GLib, allowing for easy manipulation of JSON data in C applications. | JSON, GLib, C programming, Data serialization | Software Engineering, Other Computer and Information Sciences | Library | Documentation, Uses, and more |
| julia | Anvil ACES Delta |
Julia is a high-level, high-performance dynamic programming language for technical computing, with syntax that is familiar to users of other technical computing environments. It provides a sophisticated compiler, distributed parallel execution, numerical accuracy, and extensive mathematical function libraries. | Programming Language, Technical Computing, High-Performance Computing, Scientific Computing, Numerical Analysis | Computer Science, Computer & Information Sciences | Compiler | Documentation, Uses, and more |
| julia_tamu | ACES | Documentation, Uses, and more | ||||
| jupyter | Anvil | Jupyter is an open-source web application that allows you to create and share documents that contain live code, equations, visualizations, and narrative text. It supports over 40 programming languages, including Python, R, and Julia, and is widely used in data science, scientific computing, and machine learning projects. | Data Science, Scientific Computing, Machine Learning | Data Analysis, Computer & Information Sciences | Web Application | Documentation, Uses, and more |
| kbproto | DeltaAI | The kbproto package provides the core XKB protocol and extension definitions for usage with X11 protocol libraries. | X11 Protocol, Keyboard Properties | Computer Science, Computer & Information Sciences | Protocol | Documentation, Uses, and more |
| keras | Anvil | Keras is an open-source neural network library written in Python. It is capable of running on top of TensorFlow, Microsoft Cognitive Toolkit, Theano, or PlaidML. Designed with user-friendliness and modularity as its guiding principles, Keras is known for its ease of use and flexibility, allowing users to experiment with deep neural networks. | Neural Networks, Deep Learning, Machine Learning | Artificial Intelligence & Intelligent Systems, Computer & Information Sciences | Library | Documentation, Uses, and more |
| kmcp | ACES | Documentation, Uses, and more | ||||
| kraken2 | Delta | Kraken 2 is a taxonomic sequence classifier that assigns taxonomic labels to short DNA sequences, such as those generated by high-throughput sequencing technologies. | bioinformatics, sequence classification, metagenomics, taxonomy | Bioinformatics, Metagenomics | Command-line tool | Documentation, Uses, and more |
| krb5 | Anvil | Kerberos is a network authentication protocol designed to provide strong authentication for client/server applications through secret-key cryptography. | Authentication, Security, Networking | Computer Science | Library | Documentation, Uses, and more |
| kubernetes | Expanse | Kubernetes is an open-source container orchestration platform designed to automate the deployment, scaling, and management of containerized applications. | Container Orchestration, Cloud Computing, DevOps, Microservices | Software Engineering, Computer and Information Sciences | Open Source | Documentation, Uses, and more |
| lammps | Anvil DeltaAI ACES Delta |
LAMMPS (Large-scale Atomic/Molecular Massively Parallel Simulator) is a classical molecular dynamics code designed for simulating large-scale atomistic systems. It is highly versatile and can be used to model a wide range of materials and complex molecular structures. | Molecular Dynamics, Simulation, Computational Chemistry | Physical Chemistry, Chemical Sciences | Code/Package | Documentation, Uses, and more |
| launcher | Anvil | Launcher is a software application that provides a centralized platform for accessing and managing various files, programs, and tools on a computer system. It serves as a customizable tool for organizing shortcuts and quick access to frequently used resources. | Software Management, File Organization, Shortcut Access | System Tool | Documentation, Uses, and more | |
| learning | Anvil | Documentation, Uses, and more | ||||
| libaio | KyRIC | libaio is a library that provides a Linux-native asynchronous I/O facility to applications. It allows applications to perform I/O operations without being blocked, thus improving performance by enabling concurrent I/O operations. | I/O Library, Linux Library, Asynchronous I/O | Software Engineering, Computer & Information Sciences | Operating System Library | Documentation, Uses, and more |
| libbsd | Anvil DeltaAI KyRIC |
libbsd is a library that provides functions typically found in the BSD operating systems. It aims to offer a more portable solution for developers needing BSD functions on non-BSD systems. | Library, Bsd, Operating System | Software Engineering, Computer & Information Sciences | Library | Documentation, Uses, and more |
| libcerf | DeltaAI | libcerf is a C library that provides efficient and accurate implementations of complex error functions, along with Dawson, Fresnel, and Voigt functions. The library is designed to facilitate the computation of complex error functions for a wide range of applications in scientific computing. | Error Functions, Scientific Computing, C Library | Applied Mathematics, Mathematics | Library | Documentation, Uses, and more |
| libedit | KyRIC | libedit is an open-source library that provides a readline-like interface for line editing in command-line applications. It is a replacement for GNU Readline used in many Unix-like systems, providing similar functionality but with a more permissive open-source license (BSD-style license). | Library, Command-Line, Line Editing, History, Open-Source | Software Engineering, Computer & Information Sciences | Tool | Documentation, Uses, and more |
| libevent | KyRIC ACES |
libevent is a robust event notification library that provides a mechanism to execute a callback function when specific events occur on a file descriptor or after a timeout has been reached. It is designed to be highly efficient and versatile, capable of handling various types of events in a scalable manner. | Event Notification, Callback Functions, Scalable, Efficient | Software Engineering, Computer & Information Sciences | Development | Documentation, Uses, and more |
| libfabric | Anvil DeltaAI KyRIC Delta |
libfabric is a high-performance library for fabric interfaces, designed to abstract fabric communication resources to applications while providing flexibility to applications that need to bypass the fabric interfaces. It provides fabric-agnostic interfaces for communication in high-performance computing (HPC) environments. | Fabric Interfaces, High-Performance Computing, Communication Resources | Computer Science, Engineering & Technology | Communication Library | Documentation, Uses, and more |
| libffi | Anvil DeltaAI KyRIC |
libffi is a library that provides a portable, high-level programming interface to various calling conventions. It allows a C function to be called from a language other than C without having to hand-write assembly code. | Library, Portability, Calling Conventions | Software Engineering, Computer & Information Sciences | Development Tool | Documentation, Uses, and more |
| libflame | Anvil | libflame is a portable library for dense matrix computations, providing high-performance implementations of the BLAS and LAPACK interfaces. | Linear Algebra, Matrix Computations, Numerical Computation | Applied Mathematics, Mathematics | Numerical Computing | Documentation, Uses, and more |
| libfontenc | DeltaAI | libfontenc is a library used for encoding font data in X Window System, allowing for the representation of various character sets. | Font Management, X Window System, Character Encoding | Software Engineering, Other Computer and Information Sciences | Library | Documentation, Uses, and more |
| libgd | DeltaAI | Libgd is an open-source graphics library. It allows your code to quickly draw images complete with lines, arcs, text, multiple colors, cut and paste from other images, and flood fills. It can generate WBMP files on the fly. It is also compatible with PHP. | Graphics Library, Image Manipulation, Php Library | Image Processing, Other Computer & Information Sciences | Graphics Library | Documentation, Uses, and more |
| libgeotiff | DeltaAI | Libgeotiff is a library for reading and writing coordinate system information embedded in geotiff files. | Geotiff, Metadata, Coordinates, Geospatial | Earth & Environmental Sciences | File Handling | Documentation, Uses, and more |
| libgpg-error | KyRIC | Libgpg-error is a small library that defines common error values for all GnuPG components. It is used by GnuPG and some other packages. | Error Handling, Library, Gnupg | Software Engineering, Computer & Information Sciences | Utility | Documentation, Uses, and more |
| libiconv | Anvil KyRIC |
libiconv is a library that provides character set conversion support. It converts text data between different character encoding schemes. | Character Set Conversion, Text Data, Encoding | Other Computer & Information Sciences, Computer & Information Sciences | Conversion Tool | Documentation, Uses, and more |
| libidn2 | DeltaAI KyRIC |
Libidn2 is a library that implements the Stringprep, Punycode and IDNA specifications defined by the IETF Internationalized Domain Names (IDN) working group. | Domain Names, Idns, Stringprep, Punycode | Software Engineering, Computer & Information Sciences | Utility | Documentation, Uses, and more |
| libjpeg-turbo | DeltaAI | libjpeg-turbo is a high-speed version of the widely-used JPEG image compression library. It uses SIMD instructions to accelerate JPEG compression and decompression on x86, x86-64, and ARM processors. | Image Compression, Jpeg Compression, Library, Open Source | Image Processing, Computer & Information Sciences | Compression Library | Documentation, Uses, and more |
| libmd | Anvil DeltaAI |
libmd is a library for molecular dynamics simulations that allows for the integration of equations of motion for particles interacting with different potentials. | Molecular Dynamics, Simulation, Library | Physical Sciences | Computational | Documentation, Uses, and more |
| libmesh | Anvil | Libmesh is a C++ finite element library designed to provide a framework for the numerical simulation of partial differential equations in high dimensions. It supports 1D, 2D, and 3D mesh generation, provides a wide range of finite element types, and includes solvers for various types of PDEs. | Finite Element Library, Numerical Simulation, Partial Differential Equations | Engineering, Other Mathematics | Library | Documentation, Uses, and more |
| libpciaccess | KyRIC | libpciaccess is a library providing generic access to the PCI bus and devices for use in user-space programs. It allows user-space drivers to directly map PCI memory regions, perform bus transactions, and query devices on the PCI bus. | Library, Pci Bus Access, User-Space Drivers | Software Engineering, Computer & Information Sciences | Programming Library | Documentation, Uses, and more |
| libpng | Anvil DeltaAI |
Libpng is the official PNG reference library, used to support the PNG (Portable Network Graphics) format for storing raster images. It provides a set of functions for creating, reading, and manipulating PNG image files. | Image Processing, Graphics Library, Raster Images | Image Processing, Computer & Information Sciences | Data Handling | Documentation, Uses, and more |
| libpthread-stubs | Anvil DeltaAI |
Documentation, Uses, and more | ||||
| libsci | DeltaAI Delta |
libsci is a library of optimized scientific routines for high-performance computing (HPC) environments. It provides a collection of mathematical functions and computational kernels tailored for scientific and engineering applications that require high computational efficiency. | Hpc, Scientific Computing, Optimization | Other Mathematics | Mathematics/Computational Software | Documentation, Uses, and more |
| libsci_acc | DeltaAI Delta |
Documentation, Uses, and more | ||||
| libseccomp | KyRIC | Libseccomp is an open-source library that provides an easy-to-use, platform-independent interface for working with the Linux Kernel's syscall filtering mechanism. It allows developers to filter system calls made by an application, restricting the actions the application can perform at the kernel level. | Syscall Filtering, Linux Kernel, Security | Systems Security, Computer & Information Sciences | Development | Documentation, Uses, and more |
| libsigsegv | KyRIC | libsigsegv is a library for handling page faults in user mode. It provides a convenient and efficient way to establish a handler for memory violations while exploring memory areas. | Library, Memory, Page Fault | Computer Science, Computer & Information Sciences | Utility | Documentation, Uses, and more |
| libszip | Anvil | libszip is a compression library for large datasets used in scientific computing and research. It provides support for efficient and high-speed compression and decompression of large data files, particularly in formats commonly used in scientific applications. | Compression Library, Scientific Computing, Data Compression, Research Tools | Bioinformatics, Other Natural Sciences | Compression | Documentation, Uses, and more |
| libtiff | Anvil DeltaAI |
libtiff is a library for reading and writing TIFF (Tagged Image File Format) files. It provides support for handling images and documents in various uncompressed and compressed formats. | Image Processing, File Format, Library, Tiff, Image Storage | Computer Science, Computer & Information Sciences | Image Processing | Documentation, Uses, and more |
| libtirpc | Anvil Expanse |
libtirpc is an open-source library that provides an implementation of Sun's Transport-Independent RPC (TI-RPC) protocol. | Software Library | Computer Science, Computer & Information Sciences | Development | Documentation, Uses, and more |
| libtool | DeltaAI KyRIC ACES |
Libtool is a generic library support script that manages the creation of static and dynamic libraries on various Unix-like operating systems. | Library Management, Software Development, Compilation | Software Engineering, Engineering & Technology | Utility/Tool | Documentation, Uses, and more |
| libunistring | DeltaAI KyRIC |
libunistring is a C library that provides functions to manipulate Unicode strings and includes functions for encoding conversion, case mapping, normalization, and more. | Unicode, Encoding, String Manipulation, Localization | Software Engineering, Computer & Information Sciences | Computational Software | Documentation, Uses, and more |
| libunwind | DeltaAI | libunwind is a portable and efficient C programming interface (API) to determine the call-chain of a program. It is primarily used for debugging, performance profiling, and runtime instrumentation. | Debugging, Profiling, Runtime Instrumentation, Call Stack, C Programming | Software Engineering, Engineering & Technology | Development | Documentation, Uses, and more |
| libv8 | Anvil | libv8 is an open-source C++ library that provides a fast and efficient JavaScript engine for embedding in various applications and tools. | Javascript Engine, C++ Library | Software Engineering, Computer & Information Sciences | Programming Library | Documentation, Uses, and more |
| libx11 | Anvil DeltaAI |
libX11 is the X Window System protocol client library which provides an interface to the X Window System core protocol and provides higher-level functions for building window systems on top of the X Window System core. | X Window System, Client Library, Window System Interface, Graphics | Software Engineering, Computer & Information Sciences, Computer Science | Software Development | Documentation, Uses, and more |
| libxau | Anvil DeltaAI |
libXau is a library that provides authentication data for Xlib-based client programs. | Library, Authentication, Xlib | Computer & Information Sciences | Documentation, Uses, and more | |
| libxcb | Anvil DeltaAI |
libxcb is a C language library for the X Window System's X protocol, providing a replacement for the traditional Xlib API. It allows for more efficient communication between X clients and the X server by reducing round-trip requests. | X Window System, C Library, X Protocol | Computer Science, Computer & Information Sciences | Programming | Documentation, Uses, and more |
| libxcrypt | DeltaAI | libxcrypt is a library for cryptographic hashing and password hashing, providing modern and secure algorithms for password storage and verification. | Cryptography, Security, Password Hashing, Libraries | Cryptography, Computer Science | Library | Documentation, Uses, and more |
| libxdmcp | Anvil DeltaAI |
libxdmcp is the X Display Manager Control Protocol library. It provides an API for the X Display Manager Control Protocol (XDMCP) for both the client and server side. | X11, Display Manager, Network Protocol | Software Engineering, Computer & Information Sciences | Networking | Documentation, Uses, and more |
| libxext | Anvil | libXext is an extension library for the X Window System that provides additional functionality to the core Xlib library. | X Window System, Graphics, Library | Computer Science, Computer and Information Sciences | Library | Documentation, Uses, and more |
| libxfont | DeltaAI | libXfont is a library used for font management in the X Window System, providing functionalities to load and manage bitmap and scalable fonts. | X Window System, Font Management, Graphics | Computer Science, Software Engineering | Library | Documentation, Uses, and more |
| libxml2 | Anvil DeltaAI KyRIC |
Libxml2 is a software library for parsing, validating, and manipulating XML and HTML documents. It provides a tree-based API for working with XML data and supports various standards such as XML 1.0, XPath, XInclude, XPointer, and XML Catalogs. | Xml, Html, Parsing, Validation, Manipulation | Software Engineering, Computer & Information Sciences | Parsing | Documentation, Uses, and more |
| libxp | DeltaAI | Documentation, Uses, and more | ||||
| libxpm | DeltaAI | libXpm is a library for reading and writing X PixMap (XPM) image files, which are commonly used in X Window System applications. | Image Processing, Graphics, X Window System | Software Engineering, Computer Science | Library | Documentation, Uses, and more |
| libxrender | Anvil | libXrender is a library that provides an interface to the X Rendering Extension, which allows for the rendering of images and shapes in a more efficient manner than traditional X11 methods. | Graphics, Rendering, X11 | Computer Science, Computer and Information Sciences | Library | Documentation, Uses, and more |
| libxscrnsaver | Anvil | libxscrnsaver is a library that provides an X Window System client interface to the X11 MIT-SCREEN-SAVER extension. It allows applications to inhibit the screensaver and screen blanking in a standardized way. | Library, X Window System, Screensaver, Screen Blanking | Computer & Information Sciences | System Library | Documentation, Uses, and more |
| libxslt | Anvil | Libxslt is the XSLT C library developed for the GNOME project. It is used for transforming XML documents into other formats using XSLT stylesheets. Libxslt is based on libxml2, the XML C parser and toolkit. | Xml, Xslt, C Library, Transformation | Software Engineering, Computer & Information Sciences | Data Processing | Documentation, Uses, and more |
| likwid | KyRIC | LIKWID is a performance analysis tool suite designed to support HPC/PCP (performance counter profiling) on Intel and AMD processors. It offers a set of command-line tools and libraries that facilitate the collection of performance data and analysis on modern hardware architectures. | Performance Analysis, Hpc, Performance Counter Profiling, Hardware Performance Counters | Performance Evaluation & Benchmarking, Engineering & Technology | Tool | Documentation, Uses, and more |
| llava-onevision | ACES | Documentation, Uses, and more | ||||
| llvm | Delta | The LLVM Project is a collection of modular and reusable compiler and toolchain technologies. LLVM is used for developing compiler back-ends, static analysis tools, and JIT compilation engines. | Compiler, Toolchain | Software Engineering, Computer & Information Sciences | Compiler | Documentation, Uses, and more |
| lmod | DeltaAI ACES Delta |
Lmod is an environment module system that helps users manage their software environment by providing a convenient way to dynamically modify the user's environment through modulefiles. It supports multiple collections of modules that can be easily swapped in and out, allowing users to load the software packages and versions they need for their work. | Module Management, Software Environment, Environment Module System | Infrastructure & Instrumentation, Engineering & Technology | Utility | Documentation, Uses, and more |
| longranger | ACES | Long Ranger is a software package developed by 10x Genomics for analyzing genomic data generated by their Chromium platform. It is specifically designed for processing and analyzing linked-read sequencing data, enabling users to perform tasks such as variant calling and structural variant detection. | Genomics, Bioinformatics, Data Analysis, Sequencing | Bioinformatics, Genomics | Analysis Software | Documentation, Uses, and more |
| lua | Expanse | Lua is a lightweight, high-level, multi-paradigm programming language designed for embedded use in applications. It is known for its simplicity, efficiency, and flexibility. | Programming Language, Scripting Language, Embedded Systems | Software Engineering, Computer & Information Sciences | Programming Language | Documentation, Uses, and more |
| luajit | Expanse | LuaJIT is a Just-In-Time Compiler for the Lua programming language, designed to improve the performance of Lua code execution. | JIT Compiler, Scripting Language, Performance Optimization | Software Engineering, Other Computer and Information Sciences | Compiler | Documentation, Uses, and more |
| lvm2 | KyRIC | Logical Volume Manager 2 (LVM2) is a system tool for managing logical volumes. It is typically used to manage disk storage space in a more flexible manner than traditional partitioning. | System Tool, Storage Management, Disk Management | Systems, Engineering & Technology | Utility | Documentation, Uses, and more |
| m4 | DeltaAI KyRIC ACES |
m4 is a general-purpose macro processor designed to be used with any programming language or data file format. It is commonly used to generate source code or text files and is often used as part of the build process for software development. | Macro Processor, Text Processing, Software Development, Build Process | Software Engineering, Computer & Information Sciences | Compiler | Documentation, Uses, and more |
| make | KyRIC | Make is a build automation tool that automatically builds executable programs and libraries from source code by reading files called Makefiles which specifies how to derive the target program. | Build Automation, Software Development, Programming | Computer Science, Engineering & Technology | Utility | Documentation, Uses, and more |
| mamba | ACES | Mamba is a reimplementation of the high-performance package manager Conda that aims to be much faster in resolving package dependencies. It provides a simple and fast way to manage environments and packages for conda-enabled systems. | Package Manager, Dependency Resolver, Environment Management | Software Engineering, Engineering & Technology | Package Manager | Documentation, Uses, and more |
| matlab | Anvil Expanse ACES Delta |
MATLAB is a high-performance language for technical computing and visualization. It integrates computation, visualization, and programming in an easy-to-use environment where problems and solutions are expressed in familiar mathematical notation. | Programming Language, Technical Computing, Visualization, Mathematical Notation | Applied Mathematics, Mathematics | Computational Software | Documentation, Uses, and more |
| maven | ACES | Apache Maven is a build automation tool used primarily for Java projects. It manages project dependencies and provides a standardized way to build, test, and deploy Java software projects. | Build Automation, Dependency Management, Java Projects | Software Development, Computer & Information Sciences | Development Tool | Documentation, Uses, and more |
| mdtest | Delta | MDTest is a file system metadata benchmark that includes tests to measure metadata operations, such as file creates, stat operations, and directory operations. It is often used to assess the metadata performance of parallel file systems. | Benchmarking, File System, Metadata | High-Performance Computing, Computer & Information Sciences | Tool | Documentation, Uses, and more |
| meep | Anvil | Meep (or MIT Electromagnetic Equation Propagation) is a free finite-difference time-domain (FDTD) simulation software package developed at MIT to model electromagnetic systems. | Simulation, Electromagnetics, Fdtd | Physical Sciences | Computational Software | Documentation, Uses, and more |
| memoryviewer | ACES | MemoryViewer is a software tool used for analyzing and visualizing memory usage and data structures within computer programs. It allows users to track memory allocation, deallocation, and usage patterns to optimize memory management. | Memory Management, Software Development, Performance Analysis | Computer & Information Sciences | Development Tool | Documentation, Uses, and more |
| mesa | Delta | Mesa is an open-source agent-based modeling framework that allows users to create and analyze computational models of complex adaptive systems. | Agent-Based Modeling, Complex Systems, Simulation, Computational Modeling | Other Computer & Information Sciences, Computer & Information Sciences | Framework | Documentation, Uses, and more |
| mesa-glu | Anvil Delta |
mesa-gl is an open-source implementation of the OpenGL specification, a system for rendering interactive 3D graphics, and a widely used and versatile graphics library. mesa-glu is the OpenGL Utility Library (GLU) component of Mesa, providing useful functions for building OpenGL applications. | Graphics, 3D Graphics, Opengl, Graphics Library | Library | Documentation, Uses, and more | |
| meson | DeltaAI | Meson is an open-source build system meant to be both extremely fast and as user-friendly as possible. | Build System, Software Development, Automation | Computer Science, Computer & Information Sciences | Compiler | Documentation, Uses, and more |
| micromamba | ACES | micromamba is a lightweight, fast, and flexible package manager for managing environments and packages in Python and other languages. It is designed to be a minimalistic alternative to conda, providing the same functionality with a smaller footprint. | package manager, environment management, Python, cross-platform | Computer Science, Software Engineering | Package Manager | Documentation, Uses, and more |
| miniconda cuquantum | DeltaAI | Documentation, Uses, and more | ||||
| miniconda3 | KyRIC ACES |
Miniconda is a free minimal installer for conda. It is a package management system that simplifies the installation and management of software packages. Miniconda allows users to create environments containing dependencies from a specified list of packages, making it easier to manage different projects with conflicting package requirements. | Package Management, Dependency Management, Software Installation | Computer Science, Computer & Information Sciences | Package Manager | Documentation, Uses, and more |
| miniforge3 | ACES | Miniforge is a community-driven minimal installer for Conda, designed to provide a lightweight and flexible environment for managing packages and environments in Python and other languages. | Conda, Package Management, Environment Management, Python | Bioinformatics, Biological Sciences | Package Manager | Documentation, Uses, and more |
| miniforge3-python | Delta | Miniforge is a community-driven minimal installer for conda, allowing users to create and manage environments with Python and other packages. | Python, Conda, Environment Management, Package Management | Software Engineering, Computer Science | Package Manager | Documentation, Uses, and more |
| miniforge3_datascience | DeltaAI | Documentation, Uses, and more | ||||
| miniforge3_pytorch | DeltaAI | Documentation, Uses, and more | ||||
| miniforge3_tensorflow_cpu | DeltaAI | Miniforge is a community-driven minimal installer for conda, which includes TensorFlow optimized for CPU usage. | conda, TensorFlow, machine learning, CPU optimization | Computer Science, Artificial Intelligence and Intelligent Systems | Package Manager | Documentation, Uses, and more |
| miniforge3_tensorflow_cuda | DeltaAI | Documentation, Uses, and more | ||||
| mkfontdir | DeltaAI | mkfontdir is a utility that generates an index of font files in a directory, creating a fonts.scale file that is used by the X Window System to manage fonts. | Font Management, X Window System, Utilities | Software Engineering, Other Computer and Information Sciences | Utility | Documentation, Uses, and more |
| mkfontscale | DeltaAI | mkfontscale is a utility that generates an index of scalable fonts for the X Window System. | Font Management, X Window System, Utilities | Software Engineering, Other Computer and Information Sciences | Utility | Documentation, Uses, and more |
| mkl | KyRIC | Intel Math Kernel Library (Intel MKL) is a highly optimized, thread-safe, mathematical library for performing mathematical, statistical, and data analysis computations. It offers high-performance implementations of BLAS, LAPACK, ScaLAPACK, sparse solvers, FFT, and more for Intel processors. | Mathematical Library, Optimized Computations, Thread-Safe Functions | Computer Science | Computational Software | Documentation, Uses, and more |
| mkl32 | KyRIC | Intel(R) Math Kernel Library for 32-bit applications | Mathematics, Computational Software, Hpc Tools | Other Mathematics | Library | Documentation, Uses, and more |
| mmseqs2-gpu | ACES | Documentation, Uses, and more | ||||
| modtree | Anvil | ModTree is a software tool for the reconstruction of modular trees of mRNA transcripts and alternative splicing events. It is designed to identify and visualize the modular organization of alternative splicing events within a transcriptome. | Transcriptomics, Alternative Splicing, Modular Trees, Data Analysis | Genetics, Biological Sciences | Computational Software | Documentation, Uses, and more |
| modulair | ACES | Documentation, Uses, and more | ||||
| modular | ACES | Documentation, Uses, and more | ||||
| module-git | Expanse | module-git is a version control system designed to efficiently handle large projects, providing powerful branching, merging, and collaboration features. It allows multiple developers to work on the same codebase concurrently and maintain a complete history of changes. | Version Control, Distributed Version Control, Collaboration, Software Development | Documentation, Uses, and more | ||
| module-info | Expanse | module-info is a software tool that provides information about loaded modules and their dependencies in a computing environment. It helps users to manage and troubleshoot software dependencies and configurations. | Software, Dependency Management, Software Configuration | System Information Tool | Documentation, Uses, and more | |
| monitor | Anvil | A monitor is an electronic visual display for computers. It usually consists of a screen, circuitry, and casing. The display device in modern monitors is typically a thin film transistor liquid crystal display (TFT-LCD) or a flat panel LED display, while older monitors used a cathode ray tube (CRT). Monitors are used to display output from the computer's graphics card, allowing users to interact with the computer and its software. | Technology, Display, Computer Hardware | Device | Documentation, Uses, and more | |
| mpc | Anvil DeltaAI KyRIC |
MPC, short for Multi-Party Computation, is a cryptographic protocol that allows multiple parties to jointly compute a function over their inputs while keeping those inputs private. It ensures data privacy and security in collaborative computations. | Cryptographic Protocol, Secure Computation, Privacy-Preserving, Collaborative Computation | Computer & Information Sciences | Cryptographic Protocol | Documentation, Uses, and more |
| mpfr | Anvil DeltaAI Expanse KyRIC |
The GNU MPFR (Multiple Precision Floating-Point Reliable) library is a C library for arbitrary-precision arithmetic on floating-point numbers that guarantees correctly rounded results. | Arbitrary-Precision Arithmetic, Floating-Point Computation, Mathematical Library | Numerical Analysis, Mathematics | Computational Software | Documentation, Uses, and more |
| mpi | KyRIC | Message Passing Interface (MPI) is a standardized and portable message-passing system designed to enable scalable, parallel computing on a wide variety of parallel computers. It is widely used in the field of high-performance computing (HPC) to develop parallel programs that can run efficiently on distributed memory architectures. | Hpc, Parallel Computing, Message Passing, Scalable Computing | Computer Science, Computer & Information Sciences | Library | Documentation, Uses, and more |
| mpich | DeltaAI KyRIC Delta |
MPICH is a high-performance and widely portable implementation of the Message Passing Interface (MPI) standard. It enables parallel computing on a wide variety of platforms and architectures. | Mpi Implementation, Parallel Computing, High Performance Computing | Computer Science, Computer & Information Sciences | Library | Documentation, Uses, and more |
| mpich-abi | DeltaAI Delta |
Documentation, Uses, and more | ||||
| mpip | DeltaAI | mpip is a small utility that helps to install and manage MPI libraries on HPC clusters by simplifying the process of downloading, configuring, building, and installing MPI libraries. | Software Utility, Hpc, Mpi Libraries, Cluster Management, Installation Tool | Engineering & Technology | Documentation, Uses, and more | |
| mpixlate | DeltaAI Delta |
Documentation, Uses, and more | ||||
| mrbayes | Anvil | MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. It employs Markov chain Monte Carlo methods to estimate the posterior distribution of model parameters. | Bayesian Inference, Phylogenetics, Evolutionary Biology | Systematics & Population Biology, Biological Sciences | Software Tool | Documentation, Uses, and more |
| mrnet | DeltaAI Delta |
MRNET (Mendelian Randomization using Network models) is a software package for performing causal inference through Mendelian randomization and network modeling. It allows researchers to investigate causal relationships between traits by leveraging genetic instrumental variables and network structures. | Causal Inference, Mendelian Randomization, Network Modeling, Genetic Instrumental Variables | Research Tool | Documentation, Uses, and more | |
| mvapich-plus | ACES | MVAPICH-Plus is a high-performance implementation of the Message Passing Interface (MPI) standard, designed for high-performance computing (HPC) environments. It is optimized for various interconnects and provides advanced features for performance and scalability. | MPI, High-Performance Computing, Parallel Computing, Networking | High-Performance Computing, Computer Science | Library | Documentation, Uses, and more |
| mvapich2 | Anvil KyRIC |
MVAPICH2 is an open-source MPI implementation for InfiniBand, iWARP, and RoCE communication protocols which delivers high performance and scalability on a wide variety of HPC systems. | Mpi Implementation, High Performance Computing, Infiniband, Open-Source | Computer Science, Physical Sciences | Library/Tool | Documentation, Uses, and more |
| mvapich2-gdr | ACES | MVAPICH2-GDR is a high-performance MPI library designed for NVIDIA GPU Direct RDMA technology, allowing direct data transfers between GPUs and networking adapters without involving the CPU. It is optimized for HPC clusters and large-scale computing environments to achieve low latency and high message rate communication. | Hpc, Mpi Library, Gpu Direct Rdma, High-Performance Computing | High-Performance Computing, Engineering & Technology | Library | Documentation, Uses, and more |
| namd | Anvil Delta |
NAMD (NAnoscale Molecular Dynamics) is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. It is optimized for the simulation of biomolecular systems containing millions of atoms. | Molecular Dynamics, Biomolecular Systems, Parallel Computing, Cuda, Simulation | Biochemistry and Molecular Biology | Computational Software | Documentation, Uses, and more |
| namd-linux-x86_64-multicore | KyRIC | NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. | Molecular Dynamics, Biomolecular Simulation, High-Performance Computing | Biophysics, Biochemistry and Molecular Biology | Simulation Software | Documentation, Uses, and more |
| namd-multicore-cuda | ACES | A parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. | Documentation, Uses, and more | |||
| namd-netlrts-smp-cuda | ACES | NAMD (NAnoscale Molecular Dynamics) is a high-performance molecular dynamics software that simulates large biomolecular systems. This version of NAMD is customized for parallel computing on multicore machines with CUDA support for GPU acceleration. | Molecular Dynamics, Simulation, Biomolecular Systems, Parallel Computing, Cuda, Gpu Acceleration | Bioinformatics, Biological Sciences | Scientific Software | Documentation, Uses, and more |
| namd-verbs-smp-cuda | ACES | A parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. | Documentation, Uses, and more | |||
| nano | DeltaAI | Nano is a simple and user-friendly text editor for Unix-like systems, designed to be easy to use for beginners while still providing powerful features for advanced users. | Text Editor, Unix, Open Source | Software Development, Computer Science | Text Editor | Documentation, Uses, and more |
| nasm | DeltaAI | NASM (Netwide Assembler) is an 80x86 and x86-64 assembler designed for portability and modularity. It supports a range of object file formats, including Linux and Windows executables, and generates code compatible with Intel syntax. | Assembler, Cross-Platform, X86, Programming | Computer Science, Computer & Information Sciences | Assembler | Documentation, Uses, and more |
| nbo | Expanse | Natural Bond Orbital (NBO) analysis is a popular method for understanding chemical bonding in molecules. It provides insight into the nature of chemical bonds, bond strengths, and electron delocalization. | Chemistry, Molecular Biology, Computational Chemistry | Physical Chemistry, Chemical Sciences | Molecular Modeling | Documentation, Uses, and more |
| nccl | DeltaAI Anvil |
NCCL (NVIDIA Collective Communication Library) is a library of multi-GPU collective communication primitives that are topology-aware and can be used to implement collective communications algorithms within CUDA kernels. | Cuda, Parallel Computing, Multi-Gpu Communication, Gpu Programming, Hpc | Computer Science, Computer & Information Sciences | Parallel Computing | Documentation, Uses, and more |
| nccl-ofi-plugin | DeltaAI | Documentation, Uses, and more | ||||
| ncl | Anvil | The NCAR Command Language (NCL) is a scripting language designed specifically for the analysis and visualization of scientific data. It is widely used in the atmospheric and related sciences. | Scientific Data Analysis, Data Visualization, Atmospheric Sciences | Environmental Sciences, Earth & Environmental Sciences | Scripting Language | Documentation, Uses, and more |
| nco | Anvil | NCO (NetCDF Operators) is a suite of programs designed to help manipulate and analyze netCDF and HDF4 files. It provides a range of powerful tools for processing and analyzing climate and weather data stored in netCDF format. | Data Manipulation, Data Analysis, Climate Data, Netcdf, Hdf4 | Environmental Science, Earth & Environmental Sciences | Command-line tool | Documentation, Uses, and more |
| ncurses | Anvil DeltaAI KyRIC ACES |
ncurses is a programming library providing an API that allows the programmer to write text-based user interfaces on a terminal. | Programming Library, Text-Based User Interfaces, Terminal Applications | Computer Science, Computer & Information Sciences | Programming/Development | Documentation, Uses, and more |
| ncview | Anvil | ncview is a visual browser for netCDF format files used for earth system data. It provides functionalities for viewing, analyzing, and interacting with data stored in netCDF files. | Data Visualization, Netcdf, Earth System Data | Earth and Environmental Sciences | Data Analysis Tool | Documentation, Uses, and more |
| netcdf | Expanse | NetCDF (Network Common Data Form) is a set of software libraries and self-describing, machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | Scientific Data, Data Storage, Data Access, Data Formats, Data Manipulation, Data Visualization | Environmental Data, Other Natural Sciences | Library | Documentation, Uses, and more |
| netcdf-c | Anvil | NetCDF (Network Common Data Form) is a set of software libraries and self-describing, machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | Data Format, Scientific Data, Data Access, Data Sharing | Climate and Global Dynamics, Other Natural Sciences | Data Format | Documentation, Uses, and more |
| netcdf-cxx | Delta | netcdf-cxx is a C++ interface for the NetCDF data format, which provides implementations to read and write self-describing, machine-independent binary data files. It is designed to simplify the use of NetCDF in C++ applications. | Netcdf, C++ | Earth & Environmental Sciences | Data Processing | Documentation, Uses, and more |
| netcdf-cxx4 | Anvil Delta |
netcdf-cxx4 is a C++ library for accessing netCDF-4 classic and extended model data formats. It provides a high-level interface for reading and writing netCDF-4 data files in C++. | Netcdf, C++, Data Format | Climate Science, Computer & Information Sciences | Data Processing | Documentation, Uses, and more |
| netcdf-fortran | Anvil | NetCDF-Fortran is a set of Fortran interfaces to the NetCDF library providing an easy-to-use, high-level access to the NetCDF file format for storing and sharing scientific data. | Scientific Data, Fortran Interface, Netcdf Library | Data Analysis, Other Natural Sciences | Programming Interface | Documentation, Uses, and more |
| netlib-lapack | Anvil | Netlib LAPACK (Linear Algebra PACKage) is a widely-used library for numerical linear algebra. It provides routines for solving systems of simultaneous linear equations, least-squares solutions of linear systems of equations, eigenvalue problems, and singular value problems. | Numerical Computing, Linear Algebra, Library, Numerical Analysis | Applied Mathematics, Computer & Information Sciences | Library | Documentation, Uses, and more |
| netperf | Expanse | Netperf is a network performance benchmarking tool that can be used to measure various aspects of network performance, including throughput and latency. | networking, performance, benchmarking, throughput, latency | Network Performance, Computer Science | Benchmarking Tool | Documentation, Uses, and more |
| nettle | DeltaAI | Nettle is a cryptographic library that is designed to be low-level and general-purpose, offering several cryptographic algorithms such as AES, ARCFOUR, Blowfish, and MD5. | Cryptography, Security, Library | Cryptography, Computer & Information Sciences, Computer Science | Library | Documentation, Uses, and more |
| nextflow | Anvil ACES |
Nextflow is a powerful workflow manager that enables the writing of parallel and scalable computational workflows using native, containerized, or cloud-enabled execution environments. | Workflow Manager, Computational Biology, Data Science | Computational Biology, Biological Sciences | Open Source | Documentation, Uses, and more |
| nf-core | Anvil | NF-core is a collection of community curated Nextflow pipelines available for genomics, transcriptomics, and other bioinformatics analyses. It provides a collection of best practices workflows that are highly optimized, scalable, and easy to use. | Bioinformatics, Workflow Management, Nextflow, Genomics, Transcriptomics | Bioinformatics, Biological Sciences | Data Analysis Tool | Documentation, Uses, and more |
| ngc | Anvil | NGC is a cloud-based hub that provides users with a comprehensive catalog of GPU-optimized software for deep learning, machine learning, and HPC applications. It offers a platform for easy deployment and integration of GPU-accelerated applications in various domains. | Cloud Computing, Deep Learning, Machine Learning, Hpc | Artificial Intelligence and Intelligent Systems | Platform | Documentation, Uses, and more |
| ngc/cuquantum-appliance | DeltaAI | Documentation, Uses, and more | ||||
| nghttp2 | DeltaAI | nghttp2 is an open-source implementation of the Hypertext Transfer Protocol version 2 (HTTP/2) and its header compression algorithm. The project also include a HTTP/2 server, client, and proxy. | Http/2, Web Protocol, Networking | Computer Science, Computer & Information Sciences | Library | Documentation, Uses, and more |
| ninja | DeltaAI | ninja is a small build system with a focus on speed. It differs from other build systems in that it is designed to have its input files generated by a higher-level build system (like CMake) and will not execute commands in parallel by default. | Build System, Software Development, Automation | Software Engineering, Systems & Development, Engineering & Technology | Utility | Documentation, Uses, and more |
| nltk | Anvil | NLTK, or Natural Language Toolkit, is a leading platform for building Python programs to work with human language data. It provides easy-to-use interfaces to over 50 corpora and lexical resources such as WordNet, along with a suite of text processing libraries for classification, tokenization, stemming, tagging, parsing, and semantic reasoning. | Python Library, Text Processing, Natural Language Processing | Informatics, Analytics & Information Science, Computer & Information Sciences | Text Analysis | Documentation, Uses, and more |
| nostack | Expanse | nostack is a platform that allows users to visually design and build custom web and mobile applications without writing code. It provides a visual interface for drag-and-drop creation of applications. | Visual Development, No-Code Platform, Application Design, Web Development | Engineering & Technology, Computer & Information Sciences | Development Platform | Documentation, Uses, and more |
| nsight | Expanse | Documentation, Uses, and more | ||||
| numactl | Anvil Expanse KyRIC |
Numactl is a set of tools that allows you to have more control over NUMA (Non-Uniform Memory Access) systems. It provides utilities for memory placement and migration of processes and controlling the NUMA policy of a process. | Numa, Memory Management, Performance Optimization | Other Computer & Information Sciences, Engineering & Technology | Tool | Documentation, Uses, and more |
| nvbandwidth | Delta | Documentation, Uses, and more | ||||
| nvhpc | Anvil ACES Delta Jetstream2 |
NVIDIA HPC SDK is a comprehensive, integrated suite of compilers, libraries, and tools for the development and optimization of GPU-accelerated high-performance computing (HPC) applications. | Hpc, Gpu Acceleration, Compilers, Libraries, Development Tools | Computer Science, Computer & Information Sciences | Development Tool | Documentation, Uses, and more |
| nvhpc-byo-compiler | Delta | Documentation, Uses, and more | ||||
| nvhpc-hpcx | Delta | Documentation, Uses, and more | ||||
| nvhpc-hpcx-2.20-cuda12 | Delta | Documentation, Uses, and more | ||||
| nvhpc-hpcx-cuda11 | Delta | Documentation, Uses, and more | ||||
| nvhpc-hpcx-cuda12 | Delta | Documentation, Uses, and more | ||||
| nvhpc-nompi | Delta | Documentation, Uses, and more | ||||
| nvidia | DeltaAI Delta |
NVIDIA Corporation is an American technology company that designs graphics processing units (GPUs) for the gaming, cryptocurrency, and professional markets, as well as system on a chip units (SoCs) for the mobile computing and automotive market. | Graphics Processing Units, High-Performance Computing, Deep Learning, Data Analytics | Computer Science, Computer & Information Sciences | Graphics Processing Units | Documentation, Uses, and more |
| nvidia hpc sdk | Anvil | The NVIDIA HPC SDK is a comprehensive suite of compilers, libraries, and tools for high-performance computing applications. It supports CUDA, OpenACC, and OpenMP programming models, enabling developers to optimize their applications for NVIDIA GPUs. | HPC, GPU Computing, CUDA, OpenACC, OpenMP | Computer Science, Computer and Information Sciences | Development Tools | Documentation, Uses, and more |
| nvidia-mixed | DeltaAI Delta |
Documentation, Uses, and more | ||||
| nvitop | DeltaAI | Documentation, Uses, and more | ||||
| nvpl-blas | DeltaAI | Documentation, Uses, and more | ||||
| nvpl-fft | DeltaAI | Documentation, Uses, and more | ||||
| nvpl-lapack | DeltaAI | Documentation, Uses, and more | ||||
| nvtop | Delta | nvtop is an NVIDIA GPU system monitoring tool with a user-friendly CLI interface. It provides real-time monitoring of GPU utilization, memory usage, temperature, power consumption, and other important metrics. | System Monitoring, Gpu Monitoring, Nvidia Gpu, Command-Line Interface, Performance Optimization | Computer Science, Computer & Information Sciences | Utility | Documentation, Uses, and more |
| nwchem | Anvil Delta |
NWChem is an open-source computational chemistry package designed for high-performance simulations of large-scale molecular systems. It provides various tools and algorithms for both classical and quantum chemical calculations. | Computational Chemistry, High-Performance Computing, Open-Source Software | Chemical Sciences | Computational Chemistry Software | Documentation, Uses, and more |
| oclfpga | KyRIC | oclfpga is an OpenCL framework for FPGA acceleration. It allows users to utilize the power of Field-Programmable Gate Arrays (FPGAs) for accelerating applications through OpenCL programming. | Opencl, Fpga, Acceleration | Engineering & Technology | Framework | Documentation, Uses, and more |
| octave | Anvil | Octave is a high-level interpreted language, primarily intended for numerical computations. It provides capabilities for the numerical solution of linear and nonlinear problems and has extensive graphics capabilities for data visualization and manipulation. | Numerical Computations, Data Visualization | Mathematics, Computer & Information Sciences | Numerical Computation Software | Documentation, Uses, and more |
| ohpc | KyRIC | OpenHPC is a collaborative, community-driven effort to provide a comprehensive and cohesive open-source HPC stack to the community. Through close collaboration with key stakeholders across the industry, OpenHPC aims to provide a reference collection of open-source HPC software components and best practices to enable the development, testing, and deployment of HPC systems. Ultimately, building on the resecarch outputs from various related fields. | Hpc, High Performance Computing, Open-Source, Collaborative, Community-Driven | Computer Science, Engineering & Technology | Computational Software | Documentation, Uses, and more |
| oneapi | Anvil | OneAPI is a unified programming model that aims to simplify development across diverse architectures such as CPUs, GPUs, FPGAs, and other accelerators. It provides a single programming interface for developers to efficiently target and deploy applications in heterogeneous computing environments. | Heterogeneous Computing, Unified Programming Model, Accelerated Computing, Performance Optimization | Computer Science, Computer & Information Sciences | Unified Programming Model | Documentation, Uses, and more |
| onnx | Anvil | ONNX (Open Neural Network Exchange) is an open-source format for AI models. It enables interoperability between different frameworks, making it easier to move models between various tools and platforms. | Ai, Machine Learning, Deep Learning | Artificial Intelligence & Intelligent Systems, Computer & Information Sciences | Interoperability Format | Documentation, Uses, and more |
| openblas | Anvil DeltaAI Expanse KyRIC Delta |
OpenBLAS is an open-source implementation of the Basic Linear Algebra Subprograms (BLAS) library with optimized functions for matrix operations and linear algebra computations. It provides fast and efficient routines for common linear algebra operations. | Linear Algebra, Blas Library, Optimized Functions, Open Source | Mathematics, Computer & Information Sciences | Library | Documentation, Uses, and more |
| opencv | Anvil Delta |
OpenCV (Open Source Computer Vision Library) is an open-source computer vision and machine learning software library. It provides a wide range of functionalities for real-time computer vision, including image processing, object detection, object tracking, and machine learning algorithms. | Computer Vision, Image Processing, Machine Learning, Open Source | Computer Science, Computer & Information Sciences | Computer Vision Library | Documentation, Uses, and more |
| openfoam | Anvil | OpenFOAM (Open Source Field Operation and Manipulation) is a free, open-source computational fluid dynamics (CFD) software package developed by the OpenFOAM Foundation. It is widely used for simulating complex fluid flows in various industries and academic research. | Computational Fluid Dynamics, Open-Source Software, Finite Volume Method, Hpc | Fluid Dynamics, Physical Sciences | Computational Software | Documentation, Uses, and more |
| openjdk | Anvil Expanse KyRIC |
OpenJDK (Open Java Development Kit) is a free and open-source implementation of the Java Platform, Standard Edition (Java SE). It is developed under the OpenJDK project as a collaboration between several companies and the open-source community. | Open-Source, Java Development, Software Development, Programming | Software Engineering, Computer & Information Sciences | Compiler | Documentation, Uses, and more |
| openldap | Expanse | OpenLDAP is an open-source implementation of the Lightweight Directory Access Protocol (LDAP) that provides a platform-independent, stable, and high-performance LDAP server suite. It is designed to provide robust, scalable, and secure directory services for managing user authentication, access control, and directory information. | Ldap, Directory Services, Authentication, Access Control, Open Source | Applied Computer Science, Computer & Information Sciences | System Software | Documentation, Uses, and more |
| openmc | ACES | OpenMC is a community-developed, open-source code for simulating the transport of neutrons and photons in a variety of materials. It is designed for high-performance computing applications and supports a wide range of geometries and materials. | Monte Carlo, neutron transport, photon transport, high-performance computing, open-source | Computational Methods, Nuclear Engineering | Simulation Software | Documentation, Uses, and more |
| openmm | ACES | OpenMM is a widely-used open-source toolkit for molecular dynamics simulation. It provides a high-performance, flexible, and easy-to-use platform for the development of computationally intensive simulations of biomolecular systems. | Molecular Dynamics, Biomolecular Simulations, Computational Chemistry, Biophysics, Gpu Acceleration | Bioinformatics, Biological Sciences | Molecular Dynamics Software | Documentation, Uses, and more |
| openmpi | Anvil Expanse KyRIC |
OpenMPI is an open-source Message Passing Interface (MPI) library that allows parallel computing on a distributed memory system. It enables high performance computing (HPC) by facilitating communication and coordination between processes running on multiple nodes. | Mpi Library, Parallel Computing, High Performance Computing, Distributed Memory System | Computer Science, Computer & Information Sciences | Development Tools | Documentation, Uses, and more |
| openmpi4 | KyRIC | OpenMPI is an open-source Message Passing Interface implementation that allows for high-performance communication between nodes in a distributed computing environment. | HPC, Parallel Computing, Message Passing, Distributed Systems | Computer Science | Library | Documentation, Uses, and more |
| openshmemx | DeltaAI Delta |
OpenSHMEMX is a portable implementation of the OpenSHMEM API designed to provide a high-performance, flexible, and scalable parallel programming model for symmetric multiprocessing (SMP) and massively parallel processing systems. It extends the original OpenSHMEM and aims to simplify the development of parallel applications. | Parallel Programming, High-Performance Computing, Distributed Memory Programming | Computer Science, Computer & Information Sciences | Parallel Programming Library | Documentation, Uses, and more |
| openssh | KyRIC | OpenSSH is a suite of secure networking utilities based on the SSH protocol, providing encrypted communication sessions over a computer network using the SSH protocol. It offers secure remote login, secure file transfer, and public key authentication functionalities. | Ssh, Secure Networking, Utilities | Computer Science, Computer & Information Sciences | Utility | Documentation, Uses, and more |
| openssl | Anvil DeltaAI KyRIC ACES |
OpenSSL is a robust, commercial-grade, and full-featured toolkit for the Transport Layer Security (TLS) and Secure Sockets Layer (SSL) protocols. It is also a general-purpose cryptography library. | Cryptography, Security, Encryption, Networking | Cryptography, Computer & Information Sciences, Other Computer & Information Sciences | Toolkit | Documentation, Uses, and more |
| operating system provided modules | KyRIC | Documentation, Uses, and more | ||||
| optix | ACES | OptiX is a GPU-accelerated ray tracing engine from NVIDIA that provides a programmable ray tracing pipeline for developers to build high-performance ray tracing applications. | Ray Tracing, Gpu-Accelerated, Real-Time Rendering | Computer Science, Computer & Information Sciences | Gpu Software | Documentation, Uses, and more |
| orca | KyRIC | Orca is a flexible, efficient, and powerful quantum chemistry software written by Frank Neese and co-workers. It provides accurate and reliable computational simulations of molecular structures and properties based on quantum mechanical methods. | Quantum Chemistry, Computational Chemistry, Quantum Mechanics | Physical Chemistry, Chemical Sciences | Quantum Chemistry Software | Documentation, Uses, and more |
| osmesa | Delta | Documentation, Uses, and more | ||||
| osu | KyRIC | Documentation, Uses, and more | ||||
| osu-micro-benchmarks | Delta | OSU Micro-Benchmarks is a suite of parallel micro-benchmarks written in C with MPI and OpenMP implementations, designed for evaluating the performance of parallel computing systems and HPC networks. | Performance Evaluation, Hpc, Benchmarking | Computer Science, Engineering & Technology | Tool | Documentation, Uses, and more |
| ovito | Anvil | OVITO (Open Visualization Tool) is a scientific visualization and analysis software for atomistic simulation data. It is designed to visualize and analyze large-scale molecular dynamics and Monte Carlo simulation results. | Visualization, Data Analysis, Molecular Dynamics, Scientific Computing | Materials Science, Computational Materials Science | Visualization Tool | Documentation, Uses, and more |
| p7zip | Expanse | p7zip is a command-line file archiver that supports the 7z compression format and various other archive formats. It is based on the open-source LZMA compression algorithm. | File Archiver, Compression Software, Command-Line Tool, Open-Source Software | Computer Science, Computer & Information Sciences | Command-line Tool | Documentation, Uses, and more |
| pandoc | ACES | Pandoc is a universal document converter that allows users to convert files from one markup format to another. It supports a wide range of formats including Markdown, HTML, LaTeX, and many others. | document conversion, markup languages, text processing, open source | Computer Science, Computer and Information Sciences | Document Converter | Documentation, Uses, and more |
| pango | DeltaAI | Pango is a library for layout and rendering of text, with an emphasis on internationalization. It forms the core of text and font handling for the GTK+ toolkit and is used by a variety of other open-source projects, including GNOME desktop environment. | Text Layout, Font Handling, Internationalization | Computer & Information Sciences | Text Processing | Documentation, Uses, and more |
| papi | Anvil DeltaAI KyRIC Delta |
PAPI (Performance Application Programming Interface) is a portable and efficient API that provides a consistent interface and methodology for collecting performance counter data from the underlying hardware. | Performance Monitoring, Api, Hardware Counter | Computer Science | Library | Documentation, Uses, and more |
| parabricks | ACES | Parabricks is a GPU-accelerated toolkit that assists in fast and accurate genomic analysis. It is designed to efficiently process raw sequencing data, such as those generated by DNA sequencing technologies, for tasks like variant calling, mapping, and genome assembly. | Genomic Analysis, DNA Sequencing, Variant Calling, Gpu Acceleration | Genomics, Biological Sciences | Toolkit | Documentation, Uses, and more |
| parafly | Anvil | Parafly is a Python library for parallelizing and distributing task execution across multiple cores or nodes, aimed at improving computational efficiency for high-performance computing applications. | Parallelization, Distributed Computing, Python Library | Computer & Information Sciences | Python Library | Documentation, Uses, and more |
| parallel | Anvil DeltaAI Expanse Delta |
GNU Parallel is a command-line tool for Unix-like operating systems that allows the user to execute shell scripts or commands in parallel. It is designed to simplify parallel job execution on single or multiple processors without the need for complex scripting. | Parallel Computing, Command-Line Tool, Task Scheduling | Computer & Information Sciences | Command-Line Tool | Documentation, Uses, and more |
| parallel-netcdf | Anvil DeltaAI Delta |
Parallel-NetCDF is a library providing high-performance I/O in parallel environments for big data applications with large scientific datasets. It offers parallel I/O capabilities for NetCDF files, which are commonly used in climate modeling, weather forecasting, and other scientific disciplines. | High-Performance I/O, Big Data, Parallel Computing | Earth & Environmental Sciences, Physical Sciences | I/O Library | Documentation, Uses, and more |
| paraview | Anvil ACES Delta |
ParaView is an open-source, multi-platform data analysis and visualization application. It is designed to handle large data sets and offers a wide range of visualization techniques to analyze and interact with the data. | Visualization, Data Analysis, Open-Source, Multi-Platform | Data Visualization, Physical Sciences, Engineering & Technology, Natural Sciences, Computer & Information Sciences, Other Natural Sciences | Data Visualization | Documentation, Uses, and more |
| patch | KyRIC Delta |
The `patch` utility is a tool used to apply changes to files based on a diff file, which contains the differences between two versions of a file or set of files. | version control, file management, diff, software development | Software Engineering, Other Computer and Information Sciences | Command-line tool | Documentation, Uses, and more |
| pciutils | Expanse | pciutils is a set of utilities for displaying information about PCI buses in the system and devices connected to them. It provides various tools for configuration, diagnostics, and monitoring of PCI devices in Linux systems. | Pci Management, System Utilities, Linux Tools | Systems, Computer & Information Sciences | Command-Line Tool | Documentation, Uses, and more |
| pcre | Anvil DeltaAI |
Perl Compatible Regular Expressions (PCRE) is a library for pattern matching with regular expressions. It implements the functionality of the regular expression library in Perl and provides support for Perl-style regular expressions in many programming languages. | Regular Expressions, Pattern Matching, Library | Biology, Computer & Information Sciences | Runtime Library | Documentation, Uses, and more |
| pcre2 | DeltaAI KyRIC |
PCRE2 is a C library implementing Perl-compatible regular expressions. It is a reimplementation of PCRE but with a different API that is designed to be compatible with Perl 5. It provides a regular expression matching engine that supports Perl-style patterns while also providing some features not found in Perl, such as matching up to 2^16 code units. | Regular Expressions, Text Processing, Pattern Matching | Biology, Computer & Information Sciences | C Library | Documentation, Uses, and more |
| pdtoolkit | KyRIC | pdtoolkit is a Python library for exploratory data analysis and preprocessing of tabular data. It provides various tools and functions for data cleaning, transformation, feature selection, and visualization. | Python Library, Exploratory Data Analysis, Data Preprocessing, Feature Selection, Visualization | Computer & Information Sciences | Python Library | Documentation, Uses, and more |
| perftools | DeltaAI | Perftools is a collection of performance analysis tools designed to help developers optimize their software by identifying performance bottlenecks and areas for improvement. It includes a suite of profiling tools that can be used to analyze CPU and memory usage, as well as identify hotspots in code. | Performance Analysis, Optimization, Profiling | Engineering & Technology | Performance Analysis Tools | Documentation, Uses, and more |
| perftools-base | DeltaAI Delta |
perftools is a collection of performance analysis tools for Linux-based systems. perftools-base is the base package of perftools which includes basic performance analysis tools for profiling CPU and memory usage. | Performance Analysis, Profiling, Linux | Computer & Information Sciences | Tool | Documentation, Uses, and more |
| perftools-lite | DeltaAI | Perftools lite is a set of performance analysis tools designed for lightweight profiling and tracing of applications. It provides insights into the performance of software applications to help optimize and improve efficiency. | Performance Analysis, Profiling, Tracing | Computer Science, Computer & Information Sciences | Software Tool | Documentation, Uses, and more |
| perftools-lite-events | DeltaAI | Perftools Lite (PTL) provides a framework for lightweight performance analysis of parallel applications. It allows users to collect and analyze performance data to identify bottlenecks and optimize code performance. PTL focuses on event-based performance analysis to monitor and measure the execution behavior of parallel applications. | Performance Analysis, Parallel Applications, Optimization | Computer & Information Sciences | Compiler/Profiler | Documentation, Uses, and more |
| perftools-lite-gpu | DeltaAI | Perftools-lite-gpu is a lightweight performance analysis tool designed for GPU applications. It allows developers to analyze the performance of their GPU-accelerated applications by providing insightful metrics and visualizations. | Performance Analysis, Gpu Applications, Metrics, Visualization | Engineering & Technology | Performance Analysis Tool | Documentation, Uses, and more |
| perftools-lite-hbm | DeltaAI | PerfTools-Lite-HBM is a performance analysis tool specifically designed for profiling applications running on High Bandwidth Memory (HBM) systems. It provides insights into memory access patterns, cache behavior, and overall performance characteristics of HBM-enabled applications. | Performance Analysis, Memory Profiling, Hbm Systems, High Bandwidth Memory, Optimization | Engineering & Technology | Profiler | Documentation, Uses, and more |
| perftools-lite-loops | DeltaAI | The perftools-lite-loops software is a performance monitoring tool that focuses on analyzing loop-level performance in applications. It is designed to provide detailed insights into loop optimizations, dependencies, and potential performance bottlenecks in code. | Performance Monitoring, Optimization, Debugging | Computer & Information Sciences | Analysis Tool | Documentation, Uses, and more |
| perftools-preload | DeltaAI | perftools-preload is a tool designed to optimize and profile code performance by collecting runtime statistics, such as CPU utilization, memory usage, and function call traces. It is particularly useful for identifying performance bottlenecks and optimizing code for improved efficiency. | Performance Optimization, Code Profiling, Software Performance, Debugging | Computer Science, Computer & Information Sciences | Tool | Documentation, Uses, and more |
| perl | Anvil DeltaAI KyRIC ACES |
Perl is a high-level, general-purpose, interpreted, dynamic programming language known for its powerful text-processing features and used for a wide range of tasks including web development, system administration, and network programming. | Programming Language, Text Processing, Scripting, Web Development, System Administration | Bioinformatics, Computer & Information Sciences | Programming Language | Documentation, Uses, and more |
| perl-bioperl | Anvil | BioPerl is a collection of Perl modules that facilitate the development of Perl scripts for bioinformatics applications. | bioinformatics, perl, sequence analysis, genomics, molecular biology | Computational Biology, Biological Sciences | Library | Documentation, Uses, and more |
| petsc | Anvil DeltaAI Delta |
PETSc, the Portable, Extensible Toolkit for Scientific Computation, is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations. | Scientific Computing, Computational Science, Numerical Analysis | Applied Mathematics, Natural Sciences | Library | Documentation, Uses, and more |
| picard | Anvil ACES Delta |
Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. It is primarily used for processing and analyzing next-generation sequencing (NGS) data in genomics. | Bioinformatics, Ngs, Hts, Sequencing Data, Sam, Bam, Vcf | Genomics, Biological Sciences | Command Line Tool | Documentation, Uses, and more |
| pigz | Expanse | pigz, which stands for parallel implementation of gzip, is a compression utility that uses multiple processors and cores to compress files quickly and efficiently. It is compatible with gzip and gunzip, allowing for seamless integration with existing gzip workflows. | Compression, Parallel Processing, Utility, Command-Line Tool | Computer Science, Computer & Information Sciences | Utility | Documentation, Uses, and more |
| pixi | ACES | Documentation, Uses, and more | ||||
| pixman | Anvil DeltaAI |
Pixman is a low-level software library for pixel manipulation, providing software acceleration for numerous rendering operations. It is used primarily by projects requiring high-quality rendering such as the X server, Cairo, the GTK+ toolkit, and more. | Pixel Manipulation, Rendering, Software Library, Performance | Software Development, Computer & Information Sciences | Graphics Library | Documentation, Uses, and more |
| pkgconf | DeltaAI KyRIC ACES |
pkgconf is a package configuration system. It helps to provide a uniform and system-agnostic API for the management of build and link flags. It replaces the functionality of pkg-config. | Package Configuration, Build Flags, Link Flags, System-Agnostic | Software Engineering, Computer & Information Sciences | Package Configuration | Documentation, Uses, and more |
| plumed | DeltaAI Delta |
PLUMED is an open-source library for free energy calculations in molecular dynamics simulations. It allows for the easy and flexible implementation of enhanced sampling techniques and the calculation of various collective variables. | Molecular Dynamics, Enhanced Sampling, Free Energy Calculations, Collective Variables | Chemistry, Biological Sciences | Library | Documentation, Uses, and more |
| pmi | DeltaAI Delta |
PMI is a low-level API (Application Programming Interface) designed for managing processes in an HPC environment. It is primarily used to manage resources, handle process launch and communication, and manage job execution within parallel computing frameworks, such as those using MPI (Message Passing Interface) for distributed computing. | Distributed Systems, Job Scheduling, Parallel Computing | Computer Science | Documentation, Uses, and more | |
| pmix | KyRIC | The Process Management Interface (PMIx) is an abstract interface for managing the data and resources associated with managing parallel processes. It provides a framework and services for coordinating data exchange and interaction amongst parallel processes in high-performance computing environments. | Process Management, Parallel Computing, High-Performance Computing, Data Exchange, Resource Management, Scalability | Computer Science, Engineering & Technology | Hpc Tool | Documentation, Uses, and more |
| pocl | Delta | Portable Computing Language (pocl) is an open-source implementation of the OpenCL standard which aims to provide a portable programming layer for execution on various devices including CPUs, GPUs, and FPGAs. It enables developers to write parallel programs that can be executed efficiently across different hardware platforms. | Opencl, Parallel Computing, Hardware Acceleration | Computer Science, Computer & Information Sciences | Development Tools | Documentation, Uses, and more |
| popt | KyRIC | popt is a C library for parsing command line options. | Command Line Options, C Library | Computer & Information Sciences | Command Line Option Parser | Documentation, Uses, and more |
| pplacer | ACES | pplacer is a phylogenetic placement tool that places query sequences on a fixed reference phylogenetic tree while simultaneously estimating their likelihoods. It is particularly useful for analyzing large collections of short reads, such as those generated from next-generation sequencing technologies. | Phylogenetic Analysis, Sequence Placement, Phylogenetic Tree, Likelihood Estimation | Biological Sciences | Tool | Documentation, Uses, and more |
| prgenv | DeltaAI Delta |
Documentation, Uses, and more | ||||
| prgenv-amd | Delta | Documentation, Uses, and more | ||||
| prgenv-aocc | Delta | Documentation, Uses, and more | ||||
| prgenv-cray-amd | Delta | Documentation, Uses, and more | ||||
| prgenv-gnu | DeltaAI Delta |
The prgenv-gnu is a programming environment module that provides the GNU compiler collection (GCC) for compiling and running codes. It sets up the environment variables needed to compile and run programs using the GNU compilers. | Programming Environment, Gnu Compiler Collection (Gcc) | Computer & Information Sciences, Software Engineering, Systems & Development | Compiler | Documentation, Uses, and more |
| prgenv-gnu-amd | Delta | Documentation, Uses, and more | ||||
| prgenv-nvidia | DeltaAI Delta |
prgenv-nvidia is a software environment that provides compilers and tools optimized for NVIDIA GPUs, allowing users to develop and execute GPU-accelerated applications efficiently. | Software Environment, Compilers, Gpu Computing, Nvidia | Computational Science, Computer & Information Sciences | Compiler | Documentation, Uses, and more |
| printproto | DeltaAI | Documentation, Uses, and more | ||||
| proj | Anvil DeltaAI |
PROJ is a standard Unix filter function designed to convert geographic longitude and latitude coordinates into Cartesian coordinates. It is widely used in geospatial applications for coordinate transformation and map projection. | Geospatial, Coordinate Transformation, Map Projection | Other Natural Sciences | Coordinate Transformation Tool | Documentation, Uses, and more |
| protobuf | Anvil | Protocol buffers are a language- and platform-neutral extensible mechanism for serializing structured data. It enables you to define data structures in a JSON-like format and automatically generate code to serialize and deserialize them in a variety of languages. | Serialization, Data Interchange, Code Generation | Software Engineering, Computer & Information Sciences | Library | Documentation, Uses, and more |
| prun job launch utility | KyRIC | Documentation, Uses, and more | ||||
| py-cutadapt | Anvil | py-cutadapt is a Python package for preprocessing high-throughput sequencing data. It trims adapter sequences, removes low-quality bases, and filters out reads that do not meet specified quality thresholds. | Bioinformatics, Sequencing Data Processing, Python Package | Genomics, Biological Sciences | Bioinformatics Tool | Documentation, Uses, and more |
| py-cython | DeltaAI KyRIC |
Py-Cython is a compiler for writing C extensions for the Python language. It allows for combining Python and C code seamlessly to improve performance and efficiency. | Compiler, Python Library, Performance Optimization | Computer & Information Sciences | Development Tool | Documentation, Uses, and more |
| py-flit-core | DeltaAI | A core library for building and packaging Python projects using the Flit tool. | Python, Packaging, Build Tools | Computer Science, Software Engineering | Library | Documentation, Uses, and more |
| py-gpaw | Anvil | GPAW is an open-source software package for electronic structure calculations based on density functional theory (DFT). It uses the real-space grid method and is designed for high-performance computing environments. | DFT, Quantum Mechanics, Computational Chemistry, High-Performance Computing | Computational Materials Science, Quantum Chemistry | Scientific Software | Documentation, Uses, and more |
| py-htseq | Anvil | Py-htseq is a high-throughput sequencing (HTS) analysis tool in Python designed to process and analyze mapped sequence data, particularly for RNA-seq experiments. It facilitates gene expression analysis by counting reads that align to features in the reference genome or transcriptome. | Hts Analysis, RNA-Seq, Sequence Data Processing, Gene Expression, Transcriptomics | Bioinformatics, Biological Sciences | Sequence Analysis Tool | Documentation, Uses, and more |
| py-meson-python | DeltaAI | Documentation, Uses, and more | ||||
| py-mpi4py | Anvil | py-mpi4py is a Python interface to the Message Passing Interface (MPI) standard for parallel computing, allowing users to utilize MPI functionality within Python scripts and applications. | Python, Mpi, Parallel Computing | Computer Science, Computer & Information Sciences | Library | Documentation, Uses, and more |
| py-numpy | DeltaAI | NumPy is a fundamental package for scientific computing in Python. It provides support for arrays, matrices, and a variety of mathematical functions to operate on these data structures. | Python, Scientific Computing, Data Analysis, Numerical Computation | Applied Mathematics, Other Mathematics | Python Library | Documentation, Uses, and more |
| py-packaging | DeltaAI | A Python library for packaging Python projects, providing tools for building, distributing, and installing packages. | Python, Packaging, Development, Open Source | Computer Science, Software Engineering | Library | Documentation, Uses, and more |
| py-pip | DeltaAI | py-pip is the official installer for Python packages from the Python Package Index (PyPI). It is used to install and manage software packages written in Python. | Package Management, Python, Software Installation | Software Engineering, Computer & Information Sciences, Systems & Development | Package Management | Documentation, Uses, and more |
| py-pyproject-metadata | DeltaAI | Documentation, Uses, and more | ||||
| py-setuptools | DeltaAI KyRIC |
Setuptools is a package development process library designed to facilitate development and distribution of Python projects. It provides a common approach for managing project dependencies, packaging, and installation processes. | Python, Package Development, Distribution, Dependency Management | Computer Science, Computer & Information Sciences | Package Management | Documentation, Uses, and more |
| py-wheel | DeltaAI | Documentation, Uses, and more | ||||
| python | Anvil DeltaAI KyRIC Delta |
Python is a high-level, interpreted programming language known for its simplicity and readability. It supports multiple programming paradigms and has a vast ecosystem of libraries and frameworks. | Programming Language, Interpreted Language, High-Level Language | Software Engineering, Computer & Information Sciences, Systems & Development | Language | Documentation, Uses, and more |
| python-venv | DeltaAI | A tool for creating isolated Python environments, allowing users to manage dependencies for different projects independently. | Python, Virtual Environment, Dependency Management | Computer Science, Software Engineering | Library | Documentation, Uses, and more |
| python3 | Expanse | Python3 is a versatile, high-level programming language that is known for its readability and simplicity. It supports multiple programming paradigms such as object-oriented, imperative, functional, and procedural programming. Python3 has a comprehensive standard library and a large ecosystem of third-party packages, making it suitable for a wide range of applications. | Programming Language, Scripting Language | Computer Science, Computer & Information Sciences, Other Computer & Information Sciences | Interpreter | Documentation, Uses, and more |
| python37 | Expanse | Python 3.7 is a widely-used high-level programming language known for its readability and versatility. It supports multiple programming paradigms and is extensively used in scientific computing, data analysis, artificial intelligence, and web development. | programming, scripting, data analysis, machine learning, web development | Software Engineering, Computer Science | Programming Language | Documentation, Uses, and more |
| pytorch | Anvil | PyTorch is an open-source machine learning library used for numerical computations and building deep learning models. | Machine Learning, Deep Learning, Numerical Computation, Neural Networks | Artificial Intelligence & Intelligent Systems, Computer & Information Sciences | Machine Learning Framework | Documentation, Uses, and more |
| pytorch-conda | Delta | A package that provides a conda environment for PyTorch, a popular deep learning framework. | Deep Learning, Machine Learning, Artificial Intelligence, Data Science | Computer Science, Artificial Intelligence and Intelligent Systems | Library | Documentation, Uses, and more |
| qemu | Anvil | QEMU is a generic and open-source machine emulator and virtualizer that supports executing different operating systems and programs on a host operating system. It provides full system simulation, allowing users to run virtual machines with various architectures (x86, ARM, PowerPC, etc.) on a wide range of host platforms. QEMU can be used for various purposes such as development, testing, debugging, and virtualization. | Virtualization, Emulation, System Development | Biology, Computer & Information Sciences | Virtual Machine Emulator | Documentation, Uses, and more |
| qgis | Anvil | QGIS is a free and open-source cross-platform desktop geographic information system (GIS) application that supports viewing, editing, and analysis of geospatial data. | Gis, Mapping, Geospatial, Open Source | Geographic Information Science, Earth & Environmental Sciences | Geo-Spatial Software | Documentation, Uses, and more |
| qiime2 | ACES | QIIME 2 is an open-source bioinformatics platform for performing microbiome analysis. It provides a comprehensive suite of tools for analyzing and visualizing microbial communities from amplicon sequencing data. | Microbiome, Bioinformatics, Sequencing | Bioinformatics | Analysis Software | Documentation, Uses, and more |
| qorts | ACES | Documentation, Uses, and more | ||||
| qt | Anvil | Qt is a cross-platform C++ framework for application development. It provides a comprehensive set of libraries and tools for building graphical user interfaces, as well as for developing applications with network support, database integration, and more. | C++ Framework, Application Development, Cross-Platform, Graphical User Interface, Network Programming, Database Integration | Computer Science, Engineering & Technology | Framework | Documentation, Uses, and more |
| quantum machine 9 (qm9) | ACES | Documentation, Uses, and more | ||||
| quantum-espresso | Anvil | Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. | Quantum Mechanics, Materials Science, Computational Physics | Chemistry, Condensed Matter Physics | Package | Documentation, Uses, and more |
| quantum_espresso | Anvil | Quantum ESPRESSO is an integrated suite of open-source computer codes for electronic-structure calculations and materials modeling at the nanoscale. | Quantum Mechanics, Materials Science, Computational Physics | Physics, Condensed Matter Physics | Open-source | Documentation, Uses, and more |
| r | Anvil DeltaAI KyRIC Delta Jetstream2 |
R is a free software environment for statistical computing and graphics. It compiles and runs on a wide variety of UNIX platforms, Windows, and MacOS. | Statistical Computing, Data Analysis, Statistical Graphics | Computer Science | Statistical Software | Documentation, Uses, and more |
| rapids | ACES | RAPIDS is a suite of open-source software libraries and APIs built on NVIDIA CUDA for executing end-to-end data science and analytics pipelines entirely on GPUs. It allows for faster processing and analysis of big data. | Data Science, Analytics, Gpu Computing | Computer Science, Computer & Information Sciences | Data Science | Documentation, Uses, and more |
| rapidsai | Anvil | RAPIDS AI is an open-source suite of software libraries and APIs built on CUDA for accelerating data science and analytics pipelines. | GPU Computing, Data Science, Machine Learning, Analytics | Computer Science, Data Science | Library | Documentation, Uses, and more |
| rastair | ACES | Documentation, Uses, and more | ||||
| rattler-build | ACES | Documentation, Uses, and more | ||||
| rclone | Anvil Expanse ACES |
Rclone is a command-line program to manage files on cloud storage. It is a powerful tool that supports various cloud storage services and allows users to sync files between different storage locations. | Cloud Storage, File Synchronization, Command-Line Tool | Data Management, Computer & Information Sciences | Data Management | Documentation, Uses, and more |
| re2c | DeltaAI | re2c is a tool for writing fast and flexible lexer/scanner programs. It translates regular expressions into deterministic finite automata (DFA) and compiles them into C/C++ code. This allows for efficient lexical analysis of input streams. | Lexer, Scanner, Regular Expressions, Dfa | Software Engineering, Computer & Information Sciences | Tool | Documentation, Uses, and more |
| readline | Anvil DeltaAI KyRIC |
GNU Readline is a free software library that provides line-editing and history capabilities for interactive programs with a command-line interface. It allows users to edit command lines as they are typed in, recall and re-edit previous input, and perform basic character manipulations. | Gnu, Command Line Interface, Interactive Programs, Line Editing, History Manipulation | Software Engineering, Computer & Information Sciences | Command Line Tool | Documentation, Uses, and more |
| reframe | ACES | ReFrame is a Python library for writing tests for High Performance Computing (HPC) systems. It provides a functional testing framework designed to support a variety of different HPC systems. | Hpc, Python Library, Testing Framework | Engineering & Technology | Software Development | Documentation, Uses, and more |
| relion | Anvil | Relion is a stand-alone computer program that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class averages in electron cryo-microscopy (cryo-EM). | Cryo-Em, Image Processing, 3D Reconstruction, Macromolecular Complexes | Biochemistry and Molecular Biology | Image Processing | Documentation, Uses, and more |
| renderproto | Anvil | Documentation, Uses, and more | ||||
| rpmrebuild | ACES | A tool for rebuilding RPM packages from existing RPM files. | RPM, Package Management, Linux, Software Development | Computer Science, Software Engineering | Command Line Tool | Documentation, Uses, and more |
| rstudio | Anvil Expanse Jetstream2 |
RStudio is an integrated development environment (IDE) for R, a programming language and environment widely used for statistical computing and graphics. RStudio provides an intuitive and productive user interface for R, allowing users to efficiently write, execute, and debug R code. | Ide, Statistical Computing, Data Visualization, Programming | Statistics, Other Natural Sciences | Ide | Documentation, Uses, and more |
| samtools | Anvil Delta |
Samtools is a suite of programs for interacting with high-throughput sequencing data generated in sequence alignment/map (SAM) format, such as those produced by the Short Read Mapping (SHRiMP) or Burrows-Wheeler Aligner (BWA) aligners. It allows various operations on SAM/BAM files, including indexing, sorting, merging, and manipulating sequence alignments. | Sequence Analysis, Genomics, Bioinformatics | Bioinformatics, Biological Sciences | Command Line Tool | Documentation, Uses, and more |
| sanitizers4hpc | DeltaAI Delta |
sanitizers4hpc is a toolset designed for detecting and removing memory errors and data races in high-performance computing (HPC) applications. It offers various sanitizers to enhance the reliability and performance of parallel programs. | Memory Errors, Data Races, Hpc Applications | Computer Science, Engineering & Technology | Tool | Documentation, Uses, and more |
| scalasca | KyRIC | Scalasca is a software toolset for analyzing the performance behavior of parallel applications and specifically for identifying potential performance bottlenecks. It assists users in optimizing the performance of their parallel applications by providing scalable and usable performance data. | Performance Analysis, Parallel Applications, Performance Optimization, Mpi Applications, Visualization | Software Engineering, Systems & Development, Computer & Information Sciences | Performance Analysis Tool | Documentation, Uses, and more |
| schrodinger | ACES | Schrodinger is a leading provider of advanced molecular simulations and quantum chemistry software for Life Sciences and Materials Research. The software suite offers a wide range of tools for drug discovery and materials science applications. | Molecular Simulations, Quantum Chemistry, Drug Discovery, Materials Research | Chemistry, Chemical Sciences | Commercial | Documentation, Uses, and more |
| scorep | KyRIC | Score-P is a tool for profiling and tracing of parallel applications. It provides a comprehensive performance analysis framework for HPC applications, allowing developers to identify bottlenecks and optimize their code. | Performance Analysis, Profiling, Tracing, HPC | Computer Science | Performance Analysis Tool | Documentation, Uses, and more |
| sdsc | Expanse | SDSC (San Diego Supercomputer Center) is an organized research unit of the University of California, San Diego that provides cyberinfrastructure resources and services to researchers in the fields of computational science, data analytics, bioinformatics, and more. SDSC supports a wide range of scientific disciplines by offering high-performance computing resources, data storage solutions, software tools, consulting services, and training programs. | Supercomputing, Research Support, Data Analytics, Cyberinfrastructure | Computer & Information Sciences, Other Computer & Information Sciences, Engineering & Technology, Other Engineering & Technologies, Training, Infrastructure & Instrumentation | Documentation, Uses, and more | |
| seqkit | ACES | SeqKit is a cross-platform, ultrafast, and handy sequenced data manipulation toolkit. It allows users to quickly manipulate sequences in fasta/fastq format, including filtering, splitting, removing duplicates, converting formats, and extracting sequences. SeqKit is designed to be efficient and user-friendly for handling large-scale sequencing data. | Sequence Manipulation, Fasta, Fastq | Bioinformatics, Biological Sciences | Bioinformatics | Documentation, Uses, and more |
| settarg | DeltaAI ACES Delta |
Settarg is a command-line utility designed for setting target specific optimizations in C/C++ compilers. It helps in specifying optimization flags tailored for a particular CPU architecture to improve performance. | Compilers, Optimization, Performance Enhancement, Command-Line Tool | Command-Line Utility | Documentation, Uses, and more | |
| shadow | KyRIC | Shadow is a versatile network simulator that is designed with the aim of providing not only an efficient and scalable simulation framework but also powerful and flexible scripting engines to automate complex simulations. | Network Simulation, Scripting, Simulation Framework | Computer Science, Computer & Information Sciences | Network Simulator | Documentation, Uses, and more |
| shared | Expanse | Shared is a cloud-based collaboration platform that allows users to share files, documents, and information with team members or external collaborators. It provides a centralized location for real-time collaboration, file storage, version control, and communication. | Collaboration Platform, Cloud-Based Software, File Sharing, Communication, Version Control | Other | Cloud-Based Platform | Documentation, Uses, and more |
| singularity | KyRIC | Singularity is an open-source container platform designed to create, run, and manage containers for scientific and high-performance computing (HPC) workloads. It focuses on providing secure and portable environments for researchers and developers. | Containerization, Scientific Computing, Hpc, Research | High-Performance Computing, Computer & Information Sciences, Engineering & Technology | Platform | Documentation, Uses, and more |
| singularitypro | Expanse | SingularityPro is a container platform that allows users to create, deploy, and manage containers for high-performance computing (HPC) environments. It is designed to provide users with a flexible and scalable solution for running applications in isolated environments. | Container Platform, Hpc, High-Performance Computing | Engineering & Technology | Container Platform | Documentation, Uses, and more |
| sionlib | KyRIC | Sionlib is a library that provides an I/O interface for scientific data stored in self-describing Hierarchical Data Format (HDF5) files, often used in high-performance computing applications. It offers functionalities for reading and writing data, metadata management, and dataset manipulation, making it a valuable tool for handling complex scientific data structures. | I/O Interface, Scientific Data, Hdf5 Files | High-Performance Computing, Computer Science | Library | Documentation, Uses, and more |
| slurm | Expanse | Slurm is an open-source workload manager designed for Linux clusters of all sizes. It provides job scheduling, prioritization, and management capabilities to maximize the efficiency of cluster resources. | Workload Manager, Cluster Management, High-Performance Computing | Computer Science, Engineering & Technology | Workload Manager | Documentation, Uses, and more |
| slurm-env | Delta | slurm-env is a tool that helps manage environment variables for SLURM job scripts. SLURM, which stands for Simple Linux Utility for Resource Management, is an open-source job scheduler for Linux clusters. | Slurm, Job Scheduler, Environment Variables, Linux Clusters | Engineering & Technology | Utility Tool | Documentation, Uses, and more |
| spack | KyRIC ACES |
Spack is a flexible package management tool designed to support multiple versions of software, compilers, libraries, and tools on a wide range of platforms and configurations. It helps users easily install, uninstall, and manage software and dependencies in a reproducible and customizable way. | Package Management, Software Installation, Dependency Management, Hpc, Scientific Computing | High Performance Computing, Other Computer & Information Sciences | Utility | Documentation, Uses, and more |
| spark | Anvil Expanse |
Apache Spark is an open-source distributed computing system that provides an interface for programming entire clusters with implicit data parallelism and fault tolerance. | Distributed Computing, Big Data, Data Processing | Computer Science, Computer & Information Sciences | Distributed Computing System | Documentation, Uses, and more |
| spice-server | Anvil | Documentation, Uses, and more | ||||
| sqlite | Anvil DeltaAI KyRIC |
SQLite is a C-language library that implements a small, fast, self-contained, high-reliability, full-featured, SQL database engine. SQLite is the most widely deployed SQL database engine in the world. The source code for SQLite is in the public domain. | Relational Database, Sql, Database Management | Computer Science, Computer & Information Sciences | Library | Documentation, Uses, and more |
| squashfs | KyRIC | SquashFS is a compressed read-only filesystem for Linux. It enables efficient storage of files, in a compressed format, with a focus on high compression ratios. | Filesystem, Compression, Read-Only | Computer Science, Computer & Information Sciences | Filesystem | Documentation, Uses, and more |
| sratoolkit | Anvil Expanse |
The SRA Toolkit is a collection of tools for working with data in the Sequence Read Archive (SRA). It allows users to download, convert, and manipulate sequencing data from the SRA. | bioinformatics, genomics, data processing | Biology, Genomics | Command-line tool | Documentation, Uses, and more |
| star | Delta | STAR (Spliced Transcripts Alignment to a Reference) is a RNA-seq read aligner that maps RNA-seq data to a reference genome to identify splice junctions between exons. It is particularly useful for mapping reads that span multiple exons, thereby aiding in the analysis of alternative splicing events. | Software, RNA-Seq, Read Aligner, Splice Junctions, Alternative Splicing | Genetics, Biological Sciences | Alignment Tool | Documentation, Uses, and more |
| stat | DeltaAI Delta |
Stat is a statistical software package designed for data analysis, statistical modeling, hypothesis testing, and visualization. | Statistics, Data Analysis, Statistical Modeling, Hypothesis Testing, Visualization | Systems, Mathematics | Data Analysis Tool | Documentation, Uses, and more |
| subread | ACES | subread is a software package for processing next-generation sequencing data, including read mapping and quantification of gene and genomic feature expression levels. It is designed to efficiently handle large volumes of sequencing data with high accuracy and speed. | Ngs, Bioinformatics, Sequencing, Alignment | Bioinformatics, Biological Sciences | Ngs Analysis | Documentation, Uses, and more |
| subversion | Expanse | Subversion (SVN) is an open-source version control system that allows users to manage files and directories, track changes in the source code, and collaborate with team members on software development projects. | Version Control, Software Development, Collaboration, Teamwork | Computer Science | Development Tools | Documentation, Uses, and more |
| swig | Anvil DeltaAI |
SWIG (Simplified Wrapper and Interface Generator) is a software development tool that connects programs written in C and C++ with scripting languages such as Perl, Python, Ruby, Tcl, and more. It simplifies the process of creating interfaces for these languages, enabling developers to easily incorporate C/C++ code into their scripting language-based projects. | Software Development, Programming Tool, Scripting Languages, Interface Generator | Computer Science, Computer & Information Sciences, Software Engineering, Systems & Development | Interface Generator | Documentation, Uses, and more |
| syclomatic | ACES | Documentation, Uses, and more | ||||
| talloc | ACES | talloc is a hierarchical, reference counted memory pool system designed for C and C++ programming. It allows for easy memory management and helps prevent memory leaks. | Memory Management, C Programming, C++ Programming | Software Engineering, Other Computer and Information Sciences | Library | Documentation, Uses, and more |
| tar | Anvil KyRIC Delta |
tar is a software utility used for packaging files together into an archive file often referred to as a "tarball". It is commonly used in Unix-like operating systems for creating, storing, and managing files in a single file. | File Archiving, Compression, Terminal | Other, Computer & Information Sciences | File Management | Documentation, Uses, and more |
| tau | KyRIC | Tau is a performance analysis tool for parallel programs, providing insights into the behavior of applications across various HPC platforms. | Software, Compiler, Hpc Tools | High-Performance Computing, Physical Sciences | Commercial | Documentation, Uses, and more |
| tbb | KyRIC | Intel Threading Building Blocks (TBB) is a widely-used C++ template library for multicore programming that provides rich features for parallel programming. It offers a high-level abstraction for expressing parallelism to help developers create scalable, high-performance applications. | Multicore Programming, Parallel Computing, C++ Library, High Performance Computing | Software Engineering, Computer & Information Sciences | Programming Library | Documentation, Uses, and more |
| tbb32 | KyRIC | Intel Threading Building Blocks (TBB) is a widely used C++ template library developed by Intel for parallel programming on multi-core processors. TBB provides higher-level abstractions for parallelism, making it easier to write code that can take advantage of multicore processors. | Parallel Programming, Multi-Core Processors, C++ Template Library, Intel | Computer & Information Sciences | Library | Documentation, Uses, and more |
| tbl2asn | ACES | tbl2asn is a software tool used for converting tab-delimited files into ASN.1 format for submission to GenBank and other databases. | bioinformatics, data conversion, genomics, sequence submission | Bioinformatics, Genomics | Data Conversion Tool | Documentation, Uses, and more |
| tcl | Anvil Expanse Delta |
Tool Command Language (Tcl) is a dynamic programming language often used for creating scripts, applications, and embedded control systems. It provides a simple scripting language and a powerful code execution environment for various platforms. | Scripting Language, Dynamic Programming Language, Cross-Platform, Scripting | Software Engineering, Computer & Information Sciences | Language Interpreter | Documentation, Uses, and more |
| tensorflow | Anvil | TensorFlow is an open-source machine learning library developed by Google to build and train deep learning models. | Machine Learning, Deep Learning, Neural Networks, Model Training | Artificial Intelligence & Intelligent Systems, Computer & Information Sciences | Machine Learning Framework | Documentation, Uses, and more |
| tensorflow-conda | Delta | TensorFlow is an open-source machine learning framework developed by Google, designed for building and training deep learning models. | Machine Learning, Deep Learning, Artificial Intelligence, Data Science | Computer Science, Artificial Intelligence and Intelligent Systems | Library | Documentation, Uses, and more |
| tensorrt | ACES | TensorRT is a high-performance deep learning inference optimizer and runtime for production deployment of deep learning applications. It maximizes runtime performance through optimizations like kernel fusion, layer fusion, and precision calibration. TensorRT also delivers low latency and high throughput for deep learning inference by leveraging GPU hardware. | Deep Learning Inference, Optimization, Gpu Acceleration, Production Deployment | Computer Science, Computer & Information Sciences | Runtime | Documentation, Uses, and more |
| texlive | Anvil | TeX Live is a comprehensive distribution of TeX and related programs, providing a complete environment for typesetting documents. | Typesetting, Document Preparation, LaTeX, Open Source | Computer and Information Sciences, Computer Science | Typesetting System | Documentation, Uses, and more |
| tinker | Delta | Tinker is a software package for molecular modeling and simulations, providing tools for energy minimization, molecular dynamics, and Monte Carlo simulations. | Molecular Modeling, Computational Chemistry, Simulations | Chemistry, Chemical Sciences | Simulation Software | Documentation, Uses, and more |
| tk | Anvil Delta |
Tkinter is a standard GUI toolkit for Python. It is included with most Python installations and is widely used for building desktop applications in Python. | Gui, Python, Toolkit, Desktop Applications | Software Engineering, Computer & Information Sciences, Computer Science, Systems & Development | Library | Documentation, Uses, and more |
| tophat | Anvil | Tophat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to the genome using the Bowtie aligner and then analyzes the mapping results to identify splice junctions between exons. | RNA-Seq, Splice Junction Mapper, Genomics | Bioinformatics, Biological Sciences | Genomic Analysis Tool | Documentation, Uses, and more |
| torchani | Anvil | TorchANI is a PyTorch implementation of the ANI (Anisotropic Network Model) neural network potential for predicting molecular interactions and properties in chemical systems. | Computational Chemistry, Machine Learning, Python Library, Chemical Modeling | Physical Chemistry, Chemical Sciences | Python Library | Documentation, Uses, and more |
| totalview | Anvil | TotalView is a comprehensive parallel debugging and performance analysis solution. It provides developers with advanced tools to effectively find and fix bugs, optimize code, and improve application performance for HPC, big data, and machine learning applications. | Debugging, Performance Analysis, Hpc, Big Data, Machine Learning | Computer Science | Development & Optimization Tools | Documentation, Uses, and more |
| trimmomatic | Anvil ACES Delta |
Trimmomatic is a flexible and efficient tool for trimming raw next-generation sequencing data. It provides several trimming modes and options to cater to different sequencing platforms and quality control requirements. | Ngs Data Processing, Quality Control, Bioinformatics | Biology, Biological Sciences | Tool | Documentation, Uses, and more |
| turm | ACES | Documentation, Uses, and more | ||||
| ucx | Expanse Anvil KyRIC |
Unified Communication X (UCX) is a flexible and high-performance communication library for applications and libraries. | Communication Library, High-Performance Computing, Distributed Computing | Computer Science | Communication Library | Documentation, Uses, and more |
| udunits | Anvil | UDUNITS supports conversion of unit specifications between formatted, human-readable strings and machine-friendly structures. In addition, UDUNITS defines functions that can be used to identify whether pairs of units are conformable for mathematical operations, to convert numerical values from one unit to another, and to generate strings representing the units of quantities. | Units, Unit Conversion, Udunits | Computer and Information Sciences | Conversion Tool | Documentation, Uses, and more |
| umoci | ACES | umoci is a tool for managing Open Container Initiative (OCI) images. It allows users to create, modify, and unpack OCI container images. | Containerization, OCI, Image Management | Computer Science, Software Engineering | Command Line Tool | Documentation, Uses, and more |
| unzip | ACES | Unzip is a popular open-source file extraction utility for extracting compressed files in various formats. It is commonly used to extract files from ZIP archives, but it also supports other archive formats. | File Extraction, Compression, Utility | Computer Science, Computer & Information Sciences | File Extraction | Documentation, Uses, and more |
| util-linux | KyRIC | Util-linux is a suite of essential utilities for any Linux system. It contains various programs for handling basic system functionalities, such as mounting drives, managing partitions, controlling system processes, monitoring system performance, and more. | Linux, System Utilities, Command Line Tools | Operating Systems, Computer & Information Sciences | Operating System Tools | Documentation, Uses, and more |
| util-linux-uuid | Anvil DeltaAI KyRIC Delta |
util-linux-uuid is a command-line utility that allows users to generate universally unique identifiers (UUIDs) in various formats. UUIDs are 128-bit numbers used as identifiers for entities in computer systems with a high probability of being unique. | Uuid Generator, Command-Line Utility, Unique Identifier, Data Management | Computer Science, Computer & Information Sciences | Command-Line Tool | Documentation, Uses, and more |
| util-macros | DeltaAI KyRIC |
util-macros is a collection of utility macros for C programmers to aid in simplifying common tasks and improving code readability. These macros are designed to enhance the efficiency and maintainability of C code by providing useful functions and utilities. | Programming, Development, C Programming, Utility Macros | Computer Science, Computer & Information Sciences | Utility | Documentation, Uses, and more |
| uv | ACES | uv is a high-performance Python package manager, project manager, and virtual environment tool designed as a fast, drop-in replacement for pip, pipx, venv, and virtualenv. | Python, Package Management | Documentation, Uses, and more | ||
| valgrind | Anvil | Valgrind is a programming tool for memory debugging, memory leak detection, and profiling. It can also be used for cache and thread error detection. | Debugging, Profiling, Development Tool | Computer Science, Computer & Information Sciences | Programming Tool | Documentation, Uses, and more |
| valgrind memory debugger | KyRIC | Valgrind is an instrumentation framework for building dynamic analysis tools. It is primarily used for memory debugging, memory leak detection, and profiling programs in a variety of programming languages. | Memory Debugging, Profiling, Performance Analysis, Dynamic Analysis | Software Engineering, Computer Science | Debugging Tool | Documentation, Uses, and more |
| valgrind4hpc | DeltaAI Delta |
Valgrind4HPC is a performance analysis tool suite specifically designed for high-performance computing (HPC) environments. It provides a comprehensive set of tools for profiling, memory debugging, and thread analysis to help optimize and improve the performance of parallel and distributed applications on HPC systems. | Performance Analysis, Hpc Environments, Profiling, Memory Debugging, Thread Analysis, Parallel Programming | Computer & Information Sciences, Engineering & Technology | Tool | Documentation, Uses, and more |
| vasp | Anvil | VASP (Vienna Ab-initio Simulation Package) is a computer program for atomic scale materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics, from first principles. | Materials Modelling, Electronic Structure Calculations, Quantum-Mechanical Simulations, Dft Calculations, Molecular Dynamics | Chemistry, Physical Sciences, Engineering & Technology | Package | Documentation, Uses, and more |
| vcftools | Anvil Delta |
VCFtools is a software package for manipulating and analyzing genetic variation data stored in Variant Call Format (VCF) files. It provides a wide range of tools for quality control, filtering, summarization, and other analyses of genetic variants. | Genetic Variation Analysis, Variant Call Format (Vcf), Population Genetics, Bioinformatics | Bioinformatics, Biological Sciences | Data Analysis Tool | Documentation, Uses, and more |
| vesta | ACES | VESTA is a 3D visualization software for structural models, volumetric data, and crystal structures. It allows users to manipulate and analyze complex molecular and crystal structures with a range of visualization options. | 3D Visualization, Crystallography, Molecular Modeling, Structural Analysis | Chemical Sciences | Scientific Software | Documentation, Uses, and more |
| visit | Anvil Delta |
Visit is an open-source interactive parallel visualization and graphical analysis tool. It is designed to handle very large data set visualization and enable users to visualize and analyze data from a variety of sources. | Visualization, Data Analysis, Scientific Computing | Informatics, Analytics & Information Science, Computer & Information Sciences | Visualization Software | Documentation, Uses, and more |
| visual studio code | Anvil | Visual Studio Code is a source-code editor developed by Microsoft. It includes support for debugging, syntax highlighting, intelligent code completion, snippets, code refactoring, and embedded Git. | Code Editor, IDE, Open Source, Cross-Platform | Computer Science | Code Editor | Documentation, Uses, and more |
| vlc player | Anvil | VLC media player is a free and open-source multimedia player and framework that plays most multimedia files, as well as DVDs, audio CDs, VCDs, and various streaming protocols. | Media Player, Open Source, Cross-Platform, Streaming | Computer Science | Multimedia Player | Documentation, Uses, and more |
| vmd | Anvil Expanse |
Visual Molecular Dynamics (VMD) is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. | Molecular Visualization, Molecular Dynamics, Structural Biology | Biophysics, Biochemistry & Molecular Biology, Biological Sciences | Molecular Visualization Tool | Documentation, Uses, and more |
| vmtouch | DeltaAI | vmtouch is a tool for controlling the file system cache in Linux. It allows users to lock files into memory, ensuring that they remain cached and accessible for faster access, which can be particularly useful for performance tuning in high-performance computing environments. | Linux, File System, Performance Tuning, Caching | Computer Science | Utility | Documentation, Uses, and more |
| vpl | KyRIC | VPL (Visual Programming Language) is a software tool that allows users to create programs by manipulating graphical elements rather than by specifying them textually. It provides a visual interface for programming tasks, making it easier for beginners to understand programming concepts and create functioning code. | Visual Programming, Beginner-Friendly, Graphical Interface | Computer & Information Sciences | Language Programming | Documentation, Uses, and more |
| vscode | ACES | Visual Studio Code (VSCode) is a source-code editor developed by Microsoft that includes support for debugging, syntax highlighting, intelligent code completion, snippets, code refactoring, and embedded Git. | Code Editor, Development, Open Source, Cross-Platform | Computer Science | Code Editor | Documentation, Uses, and more |
| vtk | Anvil | The Visualization Toolkit (VTK) is an open-source software system for 3D computer graphics, image processing, and visualization used by thousands of researchers and developers around the world. VTK offers a wide range of functionality for tasks such as scientific visualization, medical imaging, computational fluid dynamics, and more. | 3D Computer Graphics, Image Processing, Scientific Visualization, Medical Imaging, Computational Fluid Dynamics | Computer Graphics, Physical Sciences | Visualization | Documentation, Uses, and more |
| vtune | KyRIC ACES |
VTune Profiler is a performance profiling tool for optimizing application performance on Intel architecture. It provides deep insights to help you understand and improve performance and power characteristics of your application. | Performance Optimization, Profiling, Intel Architecture | Software Engineering, Computer & Information Sciences | Profiling Tool | Documentation, Uses, and more |
| vulkansdk | ACES | The Vulkan SDK provides a comprehensive set of tools, libraries, and documentation for developers to create high-performance graphics applications using the Vulkan API. | Graphics, API, High Performance, Cross-platform | Computer Science | SDK | Documentation, Uses, and more |
| wannier90 | Anvil | Wannier90 is a tool used for the computation of maximally-localized Wannier functions, which are spatially compact and localized functions that provide a natural description of the electronic structure of a solid. These functions are often used in condensed matter physics calculations to study the electronic properties of materials. | Computational Chemistry, Solid State Physics, Electronic Structure, Materials Science | Condensed Matter Physics, Physical Sciences | Library | Documentation, Uses, and more |
| webproxy | ACES | WebProxy is a tool that allows users to access websites anonymously by hiding their IP address. It acts as an intermediary between the user's device and the internet, masking the user's IP address and encrypting their internet traffic for increased privacy and security. | Proxy Server, Internet Privacy, Security, Anonymity | Computer & Information Sciences | Tool | Documentation, Uses, and more |
| which | DeltaAI | Documentation, Uses, and more | ||||
| xalt | Anvil Jetstream2 |
XALT (XALT Accounting for Loadable and Transient Objects) is a tool designed to track the detailed usage of HPC systems by monitoring library dependencies and executables during job executions. It captures information on modules, compilers, libraries, and executables used in each job, providing detailed insights into the software stack and usage patterns on the HPC system. | Hpc, Monitoring | Computer Science, Engineering & Technology | Performance Tracking | Documentation, Uses, and more |
| xcb-proto | Anvil DeltaAI |
Documentation, Uses, and more | ||||
| xcb-util-cursor | Delta | xcb-util-cursor is a library that provides an interface for managing cursors in X11 applications using the XCB (X C Binding) protocol. | X11, Cursor Management, XCB | Software Engineering, Other Computer and Information Sciences | Library | Documentation, Uses, and more |
| xcb-util-image | Anvil | The xcb-util-image library provides a number of functions used for manipulating and creating XCB format images, including loading and saving images to disk in various formats. | Image Processing, Xcb, Library | Computer & Information Sciences | Library | Documentation, Uses, and more |
| xcb-util-keysyms | Anvil | The xcb-util-keysyms library provides utility functions for obtaining the keysyms keycode values, as used in the X Window System, as well as common XKB functions. It is part of the X C Bindings (XCB) utility libraries which provide a number of convenience functions and interfaces for usage with XCB. | X Window System, Utility Functions, Xcb | Computer Science, Computer & Information Sciences | Utility | Documentation, Uses, and more |
| xcb-util-renderutil | Anvil | A set of libraries which provide a convenient API for rendering text with XCB. | Xcb, Rendering, Text, Api | Computer & Information Sciences | Rendering | Documentation, Uses, and more |
| xcb-util-wm | Anvil | xcb-util-wm is a set of utility functions for interfacing with the X Window Manager (WM) extension of the XCB library. It provides a number of functions that are useful to XCB WM clients. | X Window System, Window Manager, Xcb Library, Utility Functions | Utility | Documentation, Uses, and more | |
| xdinfo | Expanse | xdinfo is a Python package which provides information about X-ray diffraction (XD) like functions, atomic scattering, Mueller matrix, XD profiles, and more. It is designed for the analysis and interpretation of X-ray diffraction data in various scientific applications. | Python Package, X-Ray Diffraction Analysis, Scientific Data Interpretation | Physical Sciences | Library | Documentation, Uses, and more |
| xextproto | Anvil DeltaAI |
X11 Extension protocols and auxiliary headers | Linux, X11, X Window System | Computer & Information Sciences | Library | Documentation, Uses, and more |
| xpmem | DeltaAI | XPMEM is a kernel module that provides a kernel-level interface for sharing memory between processes. | Kernel Module, Inter-Process Communication, Memory Sharing | Computer Science, Computer & Information Sciences | System Software | Documentation, Uses, and more |
| xproto | Anvil DeltaAI |
X Window System protocol development files. | Software Development, Protocol Development, X Window System | Computer & Information Sciences | Library | Documentation, Uses, and more |
| xterm | DeltaAI Delta |
xterm is a terminal emulator for the X Window System. It provides a command-line interface for users to interact with the system and run shell commands. | Terminal Emulator, X Window System, Open Source | Software Engineering, Other Computer and Information Sciences | Terminal Emulator | Documentation, Uses, and more |
| xtrans | DeltaAI | xtrans is a general-purpose transducer-based approach for defining translations between various formats and data representations. It provides a flexible framework for specifying bidirectional transformations between different data structures. | Data Transformation, Format Conversion, Transducer-Based Tool | Computer & Information Sciences | Tool | Documentation, Uses, and more |
| xz | Anvil DeltaAI KyRIC |
xz is a free and open-source data compression tool that uses the LZMA compression algorithm. It is designed to be an efficient and high-performance compression utility. | Compression, Data Compression, Open-Source | Computer Science, Computer & Information Sciences | Utility | Documentation, Uses, and more |
| yasm | DeltaAI | Yasm is a complete rewrite of the NASM assembler under the new BSD License. It is designed to have NASM compatibility for NASM's source code usage. Yasm currently supports the x86 and AMD64 instruction sets, accepts NASM and GAS assembler syntaxes, outputs binary, ELF32, ELF64, COFF, Mach-O (32 and 64), RDOFF2, SREC, and Hex formats, and generates source debugging information in STABS, DWARF 2, and CodeView 8 formats. | Assembler, Assembly, Development, Programming | Software Engineering, Engineering & Technology | Assembler | Documentation, Uses, and more |
| zlib | Anvil DeltaAI KyRIC ACES |
zlib is a software library for data compression that provides functions for file compression and decompression using the DEFLATE compression algorithm. It is widely used in various applications for reducing file size and conserving storage space. | Compression, Data Compression, File Compression, Deflate Algorithm | Software Engineering, Computer & Information Sciences | Data Compression | Documentation, Uses, and more |
| zlib-ng | DeltaAI Delta |
zlib-ng is a fast, efficient, and portable data compression library that is a drop-in replacement for zlib. It is designed to be compatible with zlib while providing improved performance and additional features. | compression, data processing, library, performance | Computer Science, Software Engineering | Library | Documentation, Uses, and more |
| zmqnet | DeltaAI Delta |
Documentation, Uses, and more | ||||
| zstd | DeltaAI Expanse KyRIC |
Zstandard (or zstd) is a fast data compression algorithm developed by Facebook. It is designed to provide high compression ratios with very low latency, making it suitable for real-time compression/decompression scenarios. Zstandard offers a wide range of compression levels, from very fast to very strong, allowing users to balance between speed and compression ratio based on their requirements. | Compression, Data Compression, Algorithm | Computer Science, Computer & Information Sciences | Compression Algorithm | Documentation, Uses, and more |